PMC Links for Nucleotide (Select 42516522) - PMC

Select item 3974611.

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

Rekha Seshadri, Garry S. A. Myers, Hervé Tettelin, Jonathan A. Eisen, John F. Heidelberg, Robert J. Dodson, Tanja M. Davidsen, Robert T. DeBoy, Derrick E. Fouts, Dan H. Haft, Jeremy Selengut, Qinghu Ren, Lauren M. Brinkac, Ramana Madupu, Jamie Kolonay, Scott A. Durkin, Sean C. Daugherty, Jyoti Shetty, Alla Shvartsbeyn, Elizabeth Gebregeorgis, Keita Geer, Getahun Tsegaye, Joel Malek, Bola Ayodeji, Sofiya Shatsman, Michael P. McLeod, David Šmajs, Jerrilyn K. Howell, Sangita Pal, Anita Amin, Pankaj Vashisth, Thomas Z. McNeill, Qin Xiang, Erica Sodergren, Ernesto Baca, George M. Weinstock, Steven J. Norris, Claire M. Fraser, Ian T. Paulsen

Proc Natl Acad Sci U S A. 2004 Apr 13; 101(15): 5646–5651. Published online 2004 Apr 2. doi: 10.1073/pnas.0307639101

PMCID:: PMC397461

Abstract Article PDF–491K

Select item 65578922.

Promoter activity of ORF-less gene cassettes isolated from the oral metagenome

Supathep Tansirichaiya, Peter Mullany, Adam P. Roberts

Sci Rep. 2019; 9: 8388. Published online 2019 Jun 10. doi: 10.1038/s41598-019-44640-2

PMCID:: PMC6557892

Abstract Article PDF–2.1M

Select item 45763743.

Draft genome sequence of ‘Treponema phagedenis’ strain V1, isolated from bovine digital dermatitis

Mamoona Mushtaq, Shahid Manzoor, Märit Pringle, Anna Rosander, Erik Bongcam-Rudloff

Stand Genomic Sci. 2015; 10: 67. Published online 2015 Sep 21. doi: 10.1186/s40793-015-0059-0

PMCID:: PMC4576374

Abstract Article PDF–1.8M

Select item 45622844.

Conservation and revised annotation of the Treponema denticola prcB-prcA-prtP locus encoding the dentilisin (CTLP) protease complex

M. Paula Goetting-Minesky, Valentina Godovikova, Jiean J. Li, Suchithra Seshadrinathan, John C. Timm, Shalini S. Kamodia, J. Christopher Fenno

Mol Oral Microbiol. Author manuscript; available in PMC 2015 Sep 8.

Published in final edited form as: Mol Oral Microbiol. 2013 Jun; 28(3): 181–191. Published online 2012 Dec 17. doi: 10.1111/omi.12013

PMCID:: PMC4562284

Abstract Article PDF–347K

Select item 38790115.

Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion

Jennifer H Wilson-Welder, Margaret K Elliott, Richard L Zuerner, Darrell O Bayles, David P Alt, Thad B Stanton

BMC Microbiol. 2013; 13: 280. Published online 2013 Dec 5. doi: 10.1186/1471-2180-13-280

PMCID:: PMC3879011

Abstract Article PDF–2.3M

Select item 37268376.

A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: proposal for a taxonomic revision of the phylum

Radhey S. Gupta, Sharmeen Mahmood, Mobolaji Adeolu

Front Microbiol. 2013; 4: 217. Prepublished online 2013 Jul 4. Published online 2013 Jul 30. doi: 10.3389/fmicb.2013.00217

Correction in:: Front Microbiol. 2013; 4: 322.

PMCID:: PMC3726837

Abstract Article PDF–3.4M

Select item 36544867.

Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease

Jinfeng Wang, Ji Qi, Hui Zhao, Shu He, Yifei Zhang, Shicheng Wei, Fangqing Zhao

Sci Rep. 2013; 3: 1843. Published online 2013 May 15. doi: 10.1038/srep01843

PMCID:: PMC3654486

Abstract Article PDF–3.7M

Select item 34173748.

Comparative Genomics Evidence That Only Protein Toxins are Tagging Bad Bugs

Kalliopi Georgiades, Didier Raoult

Front Cell Infect Microbiol. 2011; 1: 7. Published online 2011 Oct 25. doi: 10.3389/fcimb.2011.00007

PMCID:: PMC3417374

Abstract Article PDF–2.5M

Select item 34164319.

Oral Spirochetes Implicated in Dental Diseases Are Widespread in Normal Human Subjects and Carry Extremely Diverse Integron Gene Cassettes

Yu-Wei Wu, Mina Rho, Thomas G. Doak, Yuzhen Ye

Appl Environ Microbiol. 2012 Aug; 78(15): 5288–5296. doi: 10.1128/AEM.00564-12

PMCID:: PMC3416431

Abstract Article PDF–1.3M

Select item 315807510.

Genetic Organisation, Mobility and Predicted Functions of Genes on Integrated, Mobile Genetic Elements in Sequenced Strains of Clostridium difficile

Michael S. M. Brouwer, Philip J. Warburton, Adam P. Roberts, Peter Mullany, Elaine Allan

PLoS One. 2011; 6(8): e23014. Published online 2011 Aug 18. doi: 10.1371/journal.pone.0023014

PMCID:: PMC3158075

Abstract Article PDF–991K

Select item 310941911.

Defining Pathogenic Bacterial Species in the Genomic Era

Kalliopi Georgiades, Didier Raoult

Front Microbiol. 2010; 1: 151. Published online 2011 Jan 17. doi: 10.3389/fmicb.2010.00151

PMCID:: PMC3109419

Abstract Article PDF–2.3M

Select item 306090912.

Genomes of the Most Dangerous Epidemic Bacteria Have a Virulence Repertoire Characterized by Fewer Genes but More Toxin-Antitoxin Modules

Kalliopi Georgiades, Didier Raoult

PLoS One. 2011; 6(3): e17962. Published online 2011 Mar 18. doi: 10.1371/journal.pone.0017962

PMCID:: PMC3060909

Abstract Article PDF–449K

Select item 284374613.

Abundant Oligonucleotides Common to Most Bacteria

Colin F. Davenport, Burkhard Tümmler

PLoS One. 2010; 5(3): e9841. Published online 2010 Mar 23. doi: 10.1371/journal.pone.0009841

PMCID:: PMC2843746

Abstract Article PDF–438K

Select item 265063714.

A Variable Gene in a Conserved Region of the Helicobacter pylori Genome: Isotopic Gene Replacement or Rapid Evolution?

Armelle Ménard, Antoine Danchin, Sandrine Dupouy, Francis Mégraud, Philippe Lehours

DNA Res. 2008 Jun; 15(3): 163–168. Published online 2008 Apr 27. doi: 10.1093/dnares/dsn006

PMCID:: PMC2650637

Abstract Article PDF–182K

Select item 147564315.

Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation

Christian V Forst, Christoph Flamm, Ivo L Hofacker, Peter F Stadler

BMC Bioinformatics. 2006; 7: 67. Published online 2006 Feb 14. doi: 10.1186/1471-2105-7-67

PMCID:: PMC1475643

Abstract Article PDF–346K

Select item 137064016.

In search of RNase P RNA from microbial genomes

YONG LI, SIDNEY ALTMAN

RNA. 2004 Oct; 10(10): 1533–1540. doi: 10.1261/rna.7970404

PMCID:: PMC1370640

Abstract Article PDF–136K

Select item 134734217.

Function and Evolution of Plasmid-Borne Genes for Pyrimidine Biosynthesis in Borrelia spp.

Jianmin Zhong, Stephane Skouloubris, Qiyuan Dai, Hannu Myllykallio, Alan G. Barbour

J Bacteriol. 2006 Feb; 188(3): 909–918. doi: 10.1128/JB.188.3.909-918.2006

PMCID:: PMC1347342

Abstract Article PDF–613K

Select item 106518718.

Identification of a New Borrelia Species among Small Mammals in Areas of Northern Spain Where Lyme Disease Is Endemic

Horacio Gil, Marta Barral, Raquel Escudero, Ana L. García-Pérez, Pedro Anda

Appl Environ Microbiol. 2005 Mar; 71(3): 1336–1345. doi: 10.1128/AEM.71.3.1336-1345.2005

PMCID:: PMC1065187

Abstract Article PDF–237K

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