PMC Links for Nucleotide (Select 26245917) - PMC

Result Filters

Links from Nucleotide

Items: 1 to 20 of 107

<< First< Prev

Page of 6

Select item 1392621.

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli

R. A. Welch, V. Burland, G. Plunkett, III, P. Redford, P. Roesch, D. Rasko, E. L. Buckles, S.-R. Liou, A. Boutin, J. Hackett, D. Stroud, G. F. Mayhew, D. J. Rose, S. Zhou, D. C. Schwartz, N. T. Perna, H. L. T. Mobley, M. S. Donnenberg, F. R. Blattner

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 17020–17024. Published online 2002 Dec 5. doi: 10.1073/pnas.252529799

PMCID:: PMC139262

Abstract Article PDF–334K

Select item 69186562.

ShiF acts as an auxiliary factor of aerobactin secretion in meningitis Escherichia coli strain S88

Mathieu Genuini, Philippe Bidet, Jean-François Benoist, Dimitri Schlemmer, Chloé Lemaitre, André Birgy, Stéphane Bonacorsi

BMC Microbiol. 2019; 19: 298. Published online 2019 Dec 17. doi: 10.1186/s12866-019-1677-2

PMCID:: PMC6918656

Abstract Article PDF–943K

Select item 69172143.

Microbial genomic island discovery, visualization and analysis

Claire Bertelli, Keith E Tilley, Fiona S L Brinkman

Brief Bioinform. 2019 Sep; 20(5): 1685–1698. Published online 2018 Jun 3. doi: 10.1093/bib/bby042

PMCID:: PMC6917214

Abstract Article PDF–1.2M

Select item 68929154.

The Escherichia coli transcriptome mostly consists of independently regulated modules

Anand V. Sastry, Ye Gao, Richard Szubin, Ying Hefner, Sibei Xu, Donghyuk Kim, Kumari Sonal Choudhary, Laurence Yang, Zachary A. King, Bernhard O. Palsson

Nat Commun. 2019; 10: 5536. Published online 2019 Dec 4. doi: 10.1038/s41467-019-13483-w

PMCID:: PMC6892915

Abstract Article PDF–1.8M

Select item 68373865.

Comparative distribution of extended-spectrum beta-lactamase–producing Escherichia coli from urine infections and environmental waters

Anna Fagerström, Paula Mölling, Faisal Ahmad Khan, Martin Sundqvist, Jana Jass, Bo Söderquist

PLoS One. 2019; 14(11): e0224861. Published online 2019 Nov 7. doi: 10.1371/journal.pone.0224861

PMCID:: PMC6837386

Abstract Article PDF–2.0M

Select item 68073826.

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

Nicola De Maio, Liam P. Shaw, Alasdair Hubbard, Sophie George, Nicholas D. Sanderson, Jeremy Swann, Ryan Wick, Manal AbuOun, Emma Stubberfield, Sarah J. Hoosdally, Derrick W. Crook, Timothy E. A. Peto, Anna E. Sheppard, Mark J. Bailey, Daniel S. Read, Muna F. Anjum, A. Sarah Walker, Nicole Stoesser, on behalf of the REHAB consortium

Microb Genom. 2019 Sep; 5(9): e000294. Published online 2019 Sep 4. doi: 10.1099/mgen.0.000294

PMCID:: PMC6807382

Abstract Article PDF–864K

Select item 68029667.

Genetically diverse uropathogenic Escherichia coli adopt a common transcriptional program in patients with UTIs

Anna Sintsova, Arwen E Frick-Cheng, Sara Smith, Ali Pirani, Sargurunathan Subashchandrabose, Evan S Snitkin, Harry Mobley

eLife. 2019; 8: e49748. Published online 2019 Oct 21. doi: 10.7554/eLife.49748

PMCID:: PMC6802966

Abstract Article PDF–1.9M

Select item 67806018.

A Coordinated Response at The Transcriptome and Interactome Level is Required to Ensure Uropathogenic Escherichia coli Survival during Bacteremia

Natalia Sanchez de Groot, Marc Torrent Burgas

Microorganisms. 2019 Sep; 7(9): 292. Published online 2019 Aug 25. doi: 10.3390/microorganisms7090292

PMCID:: PMC6780601

Abstract Article PDF–2.3M

Select item 67788109.

IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands

Mehul Jani, Rajeev K. Azad

G3 (Bethesda) 2019 Oct; 9(10): 3273–3285. Published online 2019 Aug 6. doi: 10.1534/g3.119.400562

PMCID:: PMC6778810

Abstract Article PDF–1.4M

Select item 670227210.

Activation of the NLRP3 Inflammasome Pathway by Prokineticin 2 in Testicular Macrophages of Uropathogenic Escherichia coli- Induced Orchitis

Ying Li, Yufang Su, Ting Zhou, Zhiyong Hu, Jiajing Wei, Wei Wang, Chunyan Liu, Huiping Zhang, Kai Zhao

Front Immunol. 2019; 10: 1872. Published online 2019 Aug 14. doi: 10.3389/fimmu.2019.01872

PMCID:: PMC6702272

Abstract Article PDF–2.2M

Select item 669879511.

The Tol-Pal System of Uropathogenic Escherichia coli Is Responsible for Optimal Internalization Into and Aggregation Within Bladder Epithelial Cells, Colonization of the Urinary Tract of Mice, and Bacterial Motility

Hidetada Hirakawa, Kazutomo Suzue, Kumiko Kurabayashi, Haruyoshi Tomita

Front Microbiol. 2019; 10: 1827. Published online 2019 Aug 7. doi: 10.3389/fmicb.2019.01827

PMCID:: PMC6698795

Abstract Article PDF–3.4M

Select item 669168812.

Amino Acid Substitutions and Differential Gene Expression of Outer Membrane Proteins in Adherent-Invasive Escherichia coli

Carla Camprubí-Font, Belén Ruiz del Castillo, Silvia Barrabés, Luis Martínez-Martínez, Margarita Martinez-Medina

Front Microbiol. 2019; 10: 1707. Published online 2019 Aug 6. doi: 10.3389/fmicb.2019.01707

PMCID:: PMC6691688

Abstract Article PDF–2.4M

Select item 656214113.

Virulence behavior of uropathogenic Escherichia coli strains in the host model Caenorhabditis elegans

Emily Schifano, Massimiliano Marazzato, Maria Grazia Ammendolia, Elena Zanni, Marta Ricci, Antonella Comanducci, Paola Goldoni, Maria Pia Conte, Daniela Uccelletti, Catia Longhi

Microbiologyopen. 2019 Jun; 8(6): e00756. Published online 2018 Oct 31. doi: 10.1002/mbo3.756

PMCID:: PMC6562141

Abstract Article PDF–841K

Select item 641436614.

Rapid and Simple Universal Escherichia coli Genotyping Method Based on Multiple-Locus Variable-Number Tandem-Repeat Analysis Using Single-Tube Multiplex PCR and Standard Gel Electrophoresis

François Caméléna, André Birgy, Yasmine Smail, Céline Courroux, Patricia Mariani-Kurkdjian, Simon Le Hello, Stéphane Bonacorsi, Philippe Bidet

Appl Environ Microbiol. 2019 Mar 15; 85(6): e02812-18. Prepublished online 2019 Jan 4. Published online 2019 Mar 6. doi: 10.1128/AEM.02812-18

PMCID:: PMC6414366

Abstract Article PDF–1.9M

Select item 638535615.

Absence of Global Stress Regulation in Escherichia coli Promotes Pathoadaptation and Novel c-di-GMP-dependent Metabolic Capability

Nikola Zlatkov, Bernt Eric Uhlin

Sci Rep. 2019; 9: 2600. Published online 2019 Feb 22. doi: 10.1038/s41598-019-39580-w

PMCID:: PMC6385356

Abstract Article PDF–3.6M

Select item 617456216.

Determination of virulence and fitness genes associated with the pheU, pheV and selC integration sites of LEE-negative food-borne Shiga toxin-producing Escherichia coli strains

Nadja Saile, Elisabeth Schuh, Torsten Semmler, Inga Eichhorn, Lothar H. Wieler, Andreas Bauwens, Herbert Schmidt

Gut Pathog. 2018; 10: 43. Published online 2018 Oct 8. doi: 10.1186/s13099-018-0271-8

PMCID:: PMC6174562

Abstract Article PDF–2.0M

Select item 602264317.

Improved genomic island predictions with IslandPath-DIMOB

Claire Bertelli, Fiona S L Brinkman

Bioinformatics. 2018 Jul 1; 34(13): 2161–2167. Published online 2018 Feb 23. doi: 10.1093/bioinformatics/bty095

PMCID:: PMC6022643

Abstract Article PDF–311K

Select item 595615018.

TosR-Mediated Regulation of Adhesins and Biofilm Formation in Uropathogenic Escherichia coli

Courtney L. Luterbach, Valerie S. Forsyth, Michael D. Engstrom, Harry L. T. Mobley

mSphere. 2018 May-Jun; 3(3): e00222-18. Published online 2018 May 16. doi: 10.1128/mSphere.00222-18

PMCID:: PMC5956150

Abstract Article PDF–1.1M

Select item 588668719.

The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans

Christina Fassnacht, Cristina Tocchini, Pooja Kumari, Dimos Gaidatzis, Michael B. Stadler, Rafal Ciosk

PLoS Genet. 2018 Mar; 14(3): e1007252. Published online 2018 Mar 26. doi: 10.1371/journal.pgen.1007252

PMCID:: PMC5886687

Abstract Article PDF–8.0M

Select item 582096720.

Evaluation of CpxRA as a Therapeutic Target for Uropathogenic Escherichia coli Infections

Lana Dbeibo, Julia J. van Rensburg, Sara N. Smith, Kate R. Fortney, Dharanesh Gangaiah, Hongyu Gao, Juan Marzoa, Yunlong Liu, Harry L. T. Mobley, Stanley M. Spinola

Infect Immun. 2018 Mar; 86(3): e00798-17. Prepublished online 2018 Jan 8. Published online 2018 Feb 20. doi: 10.1128/IAI.00798-17