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Links from Nucleotide

Items: 17

1.
A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life
Sinan Uğur Umu, Paul P Gardner
Bioinformatics. 2017 Apr 1; 33(7): 988–996. Published online 2016 Dec 30. doi: 10.1093/bioinformatics/btw728
PMCID:
PMC5408919
AbstractArticlePDF–372K
2.
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!
John Vollmers, Sandra Wiegand, Anne-Kristin Kaster
PLoS One. 2017; 12(1): e0169662. Published online 2017 Jan 18. doi: 10.1371/journal.pone.0169662
PMCID:
PMC5242441
AbstractArticlePDF–4.9M
3.
Peat: home to novel syntrophic species that feed acetate- and hydrogen-scavenging methanogens
Oliver Schmidt, Linda Hink, Marcus A Horn, Harold L Drake
ISME J. 2016 Aug; 10(8): 1954–1966. Published online 2016 Jan 15. doi: 10.1038/ismej.2015.256
PMCID:
PMC5029166
AbstractArticlePDF–818K
4.
The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1
Suzanne C. Lambie, William J. Kelly, Sinead C. Leahy, Dong Li, Kerri Reilly, Tim A. McAllister, Edith R. Valle, Graeme T. Attwood, Eric Altermann
Stand Genomic Sci. 2015; 10: 57. Published online 2015 Aug 19. doi: 10.1186/s40793-015-0038-5
PMCID:
PMC4582637
AbstractArticlePDF–1.1M
5.
Complete Genome of a Methanosarcina mazei Strain Isolated from Sediment Samples from an Amazonian Flooded Area
Diego Assis das Graças, Rommel Thiago Jucá Ramos, Ana Carolina Vieira Araújo, Ramiro Zahlouth, Adriana Ribeiro Carneiro, Thiago Souza Lopes, Rafael Azevedo Baraúna, Vasco Azevedo, Maria Paula Cruz Schneider, Vivian Helena Pellizari, Artur Silva
Genome Announc. 2013 May-Jun; 1(3): e00271-13. Published online 2013 May 23. doi: 10.1128/genomeA.00271-13
PMCID:
PMC3662825
AbstractArticlePDF–131K
6.
Importance of uncharged polar residues and proline in the proximal two-thirds (Pro107–Ser128) of the highly conserved region of mouse ileal Na+-dependent bile acid transporter, Slc10a2, in transport activity and cellular expression
Tohru Saeki, Kosuke Sato, Shiho Ito, Keisuke Ikeda, Ryuhei Kanamoto
BMC Physiol. 2013; 13: 4. Published online 2013 Feb 4. doi: 10.1186/1472-6793-13-4
PMCID:
PMC3570448
AbstractArticlePDF–1.1M
7.
Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales
Sanae Sakai, Yoshihiro Takaki, Shigeru Shimamura, Mitsuo Sekine, Takahisa Tajima, Hiroki Kosugi, Natsuko Ichikawa, Eiji Tasumi, Aiko T. Hiraki, Ai Shimizu, Yumiko Kato, Rika Nishiko, Koji Mori, Nobuyuki Fujita, Hiroyuki Imachi, Ken Takai
PLoS One. 2011; 6(7): e22898. Published online 2011 Jul 29. doi: 10.1371/journal.pone.0022898
PMCID:
PMC3146512
AbstractArticlePDF–723K
8.
Fine-structured multi-scaling long-range correlations in completely sequenced genomes—features, origin, and classification
Tobias A. Knoch, Markus Göker, Rudolf Lohner, Anis Abuseiris, Frank G. Grosveld
Eur Biophys J. 2009 Jul; 38(6): 757–779. Published online 2009 Jun 17. doi: 10.1007/s00249-009-0489-y
PMCID:
PMC2701493
AbstractArticlePDF–1.5M
9.
Gene Order Phylogeny and the Evolution of Methanogens
Haiwei Luo, Zhiyi Sun, William Arndt, Jian Shi, Robert Friedman, Jijun Tang
PLoS One. 2009; 4(6): e6069. Published online 2009 Jun 29. doi: 10.1371/journal.pone.0006069
PMCID:
PMC2699033
AbstractArticlePDF–167K
10.
A putative viral defence mechanism in archaeal cells
Reidun Lillestøl, Peter Redder, Roger A. Garrett, Kim Brügger
Archaea. 2006 Aug; 2(1): 59–72. Published online 2006 Jul 10. doi: 10.1155/2006/542818
PMCID:
PMC2685585
AbstractArticlePDF–1.2M
11.
Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves
Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai
PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622
PMCID:
PMC2237900
AbstractArticlePDF–541K
12.
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
Kira S Makarova, Alexander V Sorokin, Pavel S Novichkov, Yuri I Wolf, Eugene V Koonin
Biol Direct. 2007; 2: 33. Published online 2007 Nov 27. doi: 10.1186/1745-6150-2-33
PMCID:
PMC2222616
AbstractArticlePDF–593K
13.
Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes
Timothy JD Goodwin, Margaret I Butler, Russell TM Poulter
BMC Biol. 2006; 4: 38. Published online 2006 Oct 27. doi: 10.1186/1741-7007-4-38
PMCID:
PMC1635734
AbstractArticlePDF–692K
14.
Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation
Sabyasachi Das, Sandip Paul, Sumit K Bag, Chitra Dutta
BMC Genomics. 2006; 7: 186. Published online 2006 Jul 25. doi: 10.1186/1471-2164-7-186
PMCID:
PMC1574309
AbstractArticlePDF–647K
15.
A computational method to predict genetically encoded rare amino acids in proteins
Barnali N Chaudhuri, Todd O Yeates
Genome Biol. 2005; 6(9): R79. Published online 2005 Aug 31. doi: 10.1186/gb-2005-6-9-r79
PMCID:
PMC1242214
AbstractArticlePDF–1.0M
16.
SIGI: score-based identification of genomic islands
Rainer Merkl
BMC Bioinformatics. 2004; 5: 22. Published online 2004 Mar 3. doi: 10.1186/1471-2105-5-22
PMCID:
PMC394314
AbstractArticlePDF–588K
17.
Biochemical and Proteomic Analysis of the Magnetosome Membrane in Magnetospirillum gryphiswaldense
Karen Grünberg, Eva-Christina Müller, Albrecht Otto, Regina Reszka, Dietmar Linder, Michael Kube, Richard Reinhardt, Dirk Schüler
Appl Environ Microbiol. 2004 Feb; 70(2): 1040–1050. doi: 10.1128/AEM.70.2.1040-1050.2004
PMCID:
PMC348919
AbstractArticlePDF–1.2M

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