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Items: 1 to 20 of 26

1.
3'-Terminal nucletide sequence (n equals 361) of bacteriophage MS2 RNA.
A Vandenberghe, W Min Jou, W Fiers
Proc Natl Acad Sci U S A. 1975 Jul; 72(7): 2559–2562. doi: 10.1073/pnas.72.7.2559
PMCID:
PMC432808
SummaryPage BrowsePDF–1008K
2.
Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species
Trudy M. Wassenaar, Se‐Ran Jun, Michael Robeson, David W. Ussery
Microbiologyopen. 2020 Feb; 9(2): e973. Published online 2019 Nov 19. doi: 10.1002/mbo3.973
PMCID:
PMC7002107
AbstractArticlePDF–1.1M
3.
Rapid Sequencing of Multiple RNA Viruses in Their Native Form
Thidathip Wongsurawat, Piroon Jenjaroenpun, Mariah K. Taylor, Jasper Lee, Aline Lavado Tolardo, Jyothi Parvathareddy, Sangam Kandel, Taylor D. Wadley, Bualan Kaewnapan, Niracha Athipanyasilp, Andrew Skidmore, Donghoon Chung, Chutikarn Chaimayo, Michael Whitt, Wannee Kantakamalakul, Ruengpung Sutthent, Navin Horthongkham, David W. Ussery, Colleen B. Jonsson, Intawat Nookaew
Front Microbiol. 2019; 10: 260. Published online 2019 Feb 25. doi: 10.3389/fmicb.2019.00260
PMCID:
PMC6398364
AbstractArticlePDF–1.8M
4.
The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA
Ling Zhu, Sangita Phadtare, Hirofumi Nariya, Ming Ouyang, Robert N. Husson, Masayori Inouye
Mol Microbiol. Author manuscript; available in PMC 2018 Dec 12.
Published in final edited form as: Mol Microbiol. 2008 Aug; 69(3): 559–569. Published online 2008 Jun 28. doi: 10.1111/j.1365-2958.2008.06284.x
PMCID:
PMC6291307
AbstractArticlePDF–1.5M
5.
Quality control implementation for universal characterization of DNA and RNA viruses in clinical respiratory samples using single metagenomic next-generation sequencing workflow
A. Bal, M. Pichon, C. Picard, J. S. Casalegno, M. Valette, I. Schuffenecker, L. Billard, S. Vallet, G. Vilchez, V. Cheynet, G. Oriol, S. Trouillet-Assant, Y. Gillet, B. Lina, K. Brengel-Pesce, F. Morfin, L. Josset
BMC Infect Dis. 2018; 18: 537. Published online 2018 Oct 29. doi: 10.1186/s12879-018-3446-5
PMCID:
PMC6206636
AbstractArticlePDF–1.2M
6.
Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR)
Adrián Ruiz-Villalba, Elizabeth van Pelt-Verkuil, Quinn D Gunst, Jan M Ruijter, Maurice JB van den Hoff
Biomol Detect Quantif. 2017 Dec; 14: 7–18. Published online 2017 Nov 1. doi: 10.1016/j.bdq.2017.10.001
PMCID:
PMC5727009
AbstractArticlePDF–2.6M
7.
Deinococcus radiodurans Toxin–Antitoxin MazEF-dr Mediates Cell Death in Response to DNA Damage Stress
Tao Li, Yulan Weng, Xiaoqiong Ma, Bing Tian, Shang Dai, Ye Jin, Mengjia Liu, Jiulong Li, Jiangliu Yu, Yuejin Hua
Front Microbiol. 2017; 8: 1427. Published online 2017 Jul 26. doi: 10.3389/fmicb.2017.01427
PMCID:
PMC5526972
AbstractArticlePDF–2.4M
8.
Multiplexed reverse transcription real-time polymerase chain reaction for simultaneous detection of Mayaro, Oropouche, and Oropouche-like viruses
Felipe Gomes Naveca, Valdinete Alves do Nascimento, Victor Costa de Souza, Bruno Tardelli Diniz Nunes, Daniela Sueli Guerreiro Rodrigues, Pedro Fernando da Costa Vasconcelos
Mem Inst Oswaldo Cruz. 2017 Jul; 112(7): 510–513. doi: 10.1590/0074-02760160062
PMCID:
PMC5452489
AbstractArticlePDF–597K
9.
Contamination-controlled high-throughput whole genome sequencing for influenza A viruses using the MiSeq sequencer
Hong Kai Lee, Chun Kiat Lee, Julian Wei-Tze Tang, Tze Ping Loh, Evelyn Siew-Chuan Koay
Sci Rep. 2016; 6: 33318. Published online 2016 Sep 14. doi: 10.1038/srep33318
PMCID:
PMC5022032
AbstractArticlePDF–1.3M
10.
Hyperexpansion of RNA Bacteriophage Diversity
Siddharth R. Krishnamurthy, Andrew B. Janowski, Guoyan Zhao, Dan Barouch, David Wang
PLoS Biol. 2016 Mar; 14(3): e1002409. Published online 2016 Mar 24. doi: 10.1371/journal.pbio.1002409
PMCID:
PMC4807089
AbstractArticlePDF–817K
11.
Mutually-induced Conformational Switching of RNA and Coat Protein Underpins Efficient Assembly of a Viral Capsid
Óttar Rolfsson, Katerina Toropova, Neil A. Ranson, Peter G. Stockley
J Mol Biol. Author manuscript; available in PMC 2016 Mar 16.
Published in final edited form as: J Mol Biol. 2010 Aug 13; 401(2): 309–322. doi: 10.1016/j.jmb.2010.05.058
PMCID:
PMC4793595
AbstractArticlePDF–2.3M
12.
Occurrence of and Sequence Variation among F-Specific RNA Bacteriophage Subgroups in Feces and Wastewater of Urban and Animal Origins
C. Hartard, R. Rivet, S. Banas, C. Gantzer
Appl Environ Microbiol. 2015 Sep; 81(18): 6505–6515. Prepublished online 2015 Jul 10. Published online 2015 Aug 19. doi: 10.1128/AEM.01905-15
PMCID:
PMC4542260
AbstractArticlePDF–1001K
13.
Characterization of a mazEF Toxin-Antitoxin Homologue from Staphylococcus equorum
Christopher F. Schuster, Jung-Ho Park, Marcel Prax, Alexander Herbig, Kay Nieselt, Ralf Rosenstein, Masayori Inouye, Ralph Bertram
J Bacteriol. 2013 Jan; 195(1): 115–125. doi: 10.1128/JB.00400-12
PMCID:
PMC3536171
AbstractArticlePDF–2.6M
14.
Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages (Family Leviviridae): Evidence for Recombinationin Environmental Strains
Stephanie D. Friedman, Wyatt C. Snellgrove, Fred J. Genthner
Viruses. 2012 Sep; 4(9): 1548–1568. Published online 2012 Sep 13. doi: 10.3390/v4091548
PMCID:
PMC3499819
AbstractArticlePDF–934K
15.
Rethinking the Evolution of Single-Stranded RNA (ssRNA) Bacteriophages Based on Genomic Sequences and Characterizations of Two R-Plasmid-Dependent ssRNA Phages, C-1 and Hgal1
Sherin Kannoly, Yongping Shao, Ing-Nang Wang
J Bacteriol. 2012 Sep; 194(18): 5073–5079. doi: 10.1128/JB.00929-12
PMCID:
PMC3430324
AbstractArticlePDF–830K
16.
Thermostable DNA Polymerase from a Viral Metagenome Is a Potent RT-PCR Enzyme
Michael J. Moser, Robert A. DiFrancesco, Krishne Gowda, Audrey J. Klingele, Darby R. Sugar, Stacy Stocki, David A. Mead, Thomas W. Schoenfeld
PLoS One. 2012; 7(6): e38371. Published online 2012 Jun 4. doi: 10.1371/journal.pone.0038371
PMCID:
PMC3366922
AbstractArticlePDF–1.4M
17.
EcoliWiki: a wiki-based community resource for Escherichia coli
Brenley K. McIntosh, Daniel P. Renfro, Gwendowlyn S. Knapp, Chanchala R. Lairikyengbam, Nathan M. Liles, Lili Niu, Amanda M. Supak, Anand Venkatraman, Adrienne E. Zweifel, Deborah A. Siegele, James C. Hu
Nucleic Acids Res. 2012 Jan; 40(Database issue): D1270–D1277. Published online 2011 Nov 7. doi: 10.1093/nar/gkr880
PMCID:
PMC3245172
AbstractArticlePDF–3.9M
18.
Multiplex Reverse Transcription PCR Luminex Assay for Detection and Quantitation of Viral Agents of Gastroenteritis
Jie Liu, Gibson Kibiki, Venance Maro, Athanasia Maro, Happy Kumburu, Ndealilia Swai, Mami Taniuchi, Jean Gratz, Denise Toney, Gagandeep Kang, Eric Houpt
J Clin Virol. Author manuscript; available in PMC 2012 Apr 1.
Published in final edited form as: J Clin Virol. 2011 Apr; 50(4): 308–313. Published online 2011 Jan 21. doi: 10.1016/j.jcv.2010.12.009
PMCID:
PMC3059344
AbstractArticlePDF–1.0M
19.
Viral Multiplex Quantitative PCR Assays for Tracking Sources of Fecal Contamination
Sandro Wolf, Joanne Hewitt, Gail E. Greening
Appl Environ Microbiol. 2010 Mar; 76(5): 1388–1394. Published online 2010 Jan 8. doi: 10.1128/AEM.02249-09
PMCID:
PMC2832383
AbstractArticlePDF–73K
20.
Gene Mapping and Phylogenetic Analysis of the Complete Genome from 30 Single-Stranded RNA Male-Specific Coliphages (Family Leviviridae)
Stephanie D. Friedman, Fred J. Genthner, Jennifer Gentry, Mark D. Sobsey, Jan Vinjé
J Virol. 2009 Nov; 83(21): 11233–11243. Published online 2009 Aug 26. doi: 10.1128/JVI.01308-09
PMCID:
PMC2772794
AbstractArticlePDF–906K

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