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Select item 68539241.

Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers

Priyanka Gopal, Elif Irem Sarihan, Eui Kyu Chie, Gwendolyn Kuzmishin, Semihcan Doken, Nathan A. Pennell, Daniel P. Raymond, Sudish C. Murthy, Usman Ahmad, Siva Raja, Francisco Almeida, Sonali Sethi, Thomas R. Gildea, Craig D. Peacock, Drew J. Adams, Mohamed E. Abazeed

Nat Commun. 2019; 10: 5143. Published online 2019 Nov 13. doi: 10.1038/s41467-019-13161-x

PMCID:: PMC6853924

Abstract Article PDF–1.7M

Select item 3602332.

95-kilodalton B-Raf serine/threonine kinase: identification of the protein and its major autophosphorylation site.

R M Stephens, G Sithanandam, T D Copeland, D R Kaplan, U R Rapp, D K Morrison

Mol Cell Biol. 1992 Sep; 12(9): 3733–3742. doi: 10.1128/mcb.12.9.3733

PMCID:: PMC360233

Summary Page Browse PDF–2.5M

Select item 68776523.

ctDNA detected by ddPCR reveals changes in tumour load in metastatic malignant melanoma treated with bevacizumab

Rakel Brendsdal Forthun, Randi Hovland, Cornelia Schuster, Hanne Puntervoll, Hans Petter Brodal, Heidi Maria Namløs, Lars Birger Aasheim, Leonardo A. Meza-Zepeda, Bjørn Tore Gjertsen, Stian Knappskog, Oddbjørn Straume

Sci Rep. 2019; 9: 17471. Published online 2019 Nov 25. doi: 10.1038/s41598-019-53917-5

PMCID:: PMC6877652

Abstract Article PDF–2.7M

Select item 68513934.

Dissecting the genetic basis of focal cortical dysplasia: a large cohort study

Sara Baldassari, Théo Ribierre, Elise Marsan, Homa Adle-Biassette, Sarah Ferrand-Sorbets, Christine Bulteau, Nathalie Dorison, Martine Fohlen, Marc Polivka, Sarah Weckhuysen, Georg Dorfmüller, Mathilde Chipaux, Stéphanie Baulac

Acta Neuropathol. 2019; 138(6): 885–900. Published online 2019 Aug 23. doi: 10.1007/s00401-019-02061-5

PMCID:: PMC6851393

Abstract Article PDF–2.6M

Select item 68165745.

Measurable residual disease monitoring for patients with acute myeloid leukemia following hematopoietic cell transplantation using error corrected hybrid capture next generation sequencing

Vidya Balagopal, Andrew Hantel, Sabah Kadri, George Steinhardt, Chao Jie Zhen, Wenjun Kang, Pankhuri Wanjari, Lauren L. Ritterhouse, Wendy Stock, Jeremy P. Segal

PLoS One. 2019; 14(10): e0224097. Published online 2019 Oct 28. doi: 10.1371/journal.pone.0224097

PMCID:: PMC6816574

Abstract Article PDF–655K

Select item 67064606.

Prenatal Diagnosis of Fetuses With Increased Nuchal Translucency by Genome Sequencing Analysis

Kwong Wai Choy, Huilin Wang, Mengmeng Shi, Jingsi Chen, Zhenjun Yang, Rui Zhang, Huanchen Yan, Yanfang Wang, Shaoyun Chen, Matthew Hoi Kin Chau, Ye Cao, Olivia Y.M. Chan, Yvonne K. Kwok, Yuanfang Zhu, Min Chen, Tak Yeung Leung, Zirui Dong

Front Genet. 2019; 10: 761. Published online 2019 Aug 16. doi: 10.3389/fgene.2019.00761

PMCID:: PMC6706460

Abstract Article PDF–2.0M

Select item 66913357.

The DNA walk and its demonstration of deterministic chaos—relevance to genomic alterations in lung cancer

Blake Hewelt, Haiqing Li, Mohit Kumar Jolly, Prakash Kulkarni, Isa Mambetsariev, Ravi Salgia

Bioinformatics. 2019 Aug 15; 35(16): 2738–2748. Published online 2019 Jan 7. doi: 10.1093/bioinformatics/bty1021

PMCID:: PMC6691335

Abstract Article PDF–1.0M

Select item 66607008.

A clinical survey of mosaic single nucleotide variants in disease-causing genes detected by exome sequencing

Ye Cao, Mari J. Tokita, Edward S. Chen, Rajarshi Ghosh, Tiansheng Chen, Yanming Feng, Elizabeth Gorman, Federica Gibellini, Patricia A. Ward, Alicia Braxton, Xia Wang, Linyan Meng, Rui Xiao, Weimin Bi, Fan Xia, Christine M. Eng, Yaping Yang, Tomasz Gambin, Chad Shaw, Pengfei Liu, Pawel Stankiewicz

Genome Med. 2019; 11: 48. Published online 2019 Jul 26. doi: 10.1186/s13073-019-0658-2

PMCID:: PMC6660700

Abstract Article PDF–980K

Select item 66278129.

Design and Validation of a Gene-Targeted, Next-Generation Sequencing Panel for Routine Diagnosis in Gliomas

Nicky D’Haene, Bárbara Meléndez, Oriane Blanchard, Nancy De Nève, Laetitia Lebrun, Claude Van Campenhout, Isabelle Salmon

Cancers (Basel) 2019 Jun; 11(6): 773. Published online 2019 Jun 4. doi: 10.3390/cancers11060773

PMCID:: PMC6627812

Abstract Article PDF–1.2M

Select item 661207110.

Clinical mutational profiling and categorization of BRAF mutations in melanomas using next generation sequencing

Parvez M. Lokhandwala, Li-Hui Tseng, Erika Rodriguez, Gang Zheng, Aparna Pallavajjalla, Christopher D. Gocke, James R. Eshleman, Ming-Tseh Lin

BMC Cancer. 2019; 19: 665. Published online 2019 Jul 5. doi: 10.1186/s12885-019-5864-1

PMCID:: PMC6612071

Abstract Article PDF–738K

Select item 659408111.

Integrative Analysis Defines Distinct Prognostic Subgroups of Intrahepatic Cholangiocarcinoma

Benjamin Goeppert, Reka Toth, Stephan Singer, Thomas Albrecht, Daniel B. Lipka, Pavlo Lutsik, David Brocks, Marion Baehr, Oliver Muecke, Yassen Assenov, Lei Gu, Volker Endris, Albrecht Stenzinger, Arianeb Mehrabi, Peter Schirmacher, Christoph Plass, Dieter Weichenhan, Stephanie Roessler

Hepatology. 2019 May; 69(5): 2091–2106. Published online 2019 Feb 28. doi: 10.1002/hep.30493

PMCID:: PMC6594081

Abstract Article PDF–1.0M

Select item 629997612.

Genomic alterations in gastric cancers discovered via whole-exome sequencing

Jie Zhang, Weiqing Qiu, Hua Liu, Changlin Qian, Dujuan Liu, Hailong Wang, Ni Hu, Y. Tom Tang, Jianhua Sun, Zhiyong Shen

BMC Cancer. 2018; 18: 1270. Published online 2018 Dec 19. doi: 10.1186/s12885-018-5097-8

PMCID:: PMC6299976

Abstract Article PDF–2.5M

Select item 617271913.

Genetic diagnosis of neurofibromatosis type 1: targeted next- generation sequencing with Multiple Ligation-Dependent Probe Amplification analysis

Yah-Huei Wu-Chou, Tzu-Chao Hung, Yin-Ting Lin, Hsing-Wen Cheng, Ju-Li Lin, Chih-Hung Lin, Chung-Chih Yu, Kuo-Ting Chen, Tu-Hsueh Yeh, Yu-Ray Chen

J Biomed Sci. 2018; 25: 72. Published online 2018 Oct 5. doi: 10.1186/s12929-018-0474-9

PMCID:: PMC6172719

Abstract Article PDF–1.9M

Select item 613115314.

Frequent functional activation of RAS signalling not explained by RAS/RAF mutations in relapsed/refractory multiple myeloma

Kwan Yeung Wong, Qiumei Yao, Ling-Qing Yuan, Zhenhai Li, Edmond Shiu Kwan Ma, Chor Sang Chim

Sci Rep. 2018; 8: 13522. Published online 2018 Sep 10. doi: 10.1038/s41598-018-31820-9

PMCID:: PMC6131153

Abstract Article PDF–1.5M

Select item 605391515.

Novel activating BRAF fusion identifies a recurrent alternative mechanism for ERK activation in pediatric Langerhans cell histiocytosis

Sara Zarnegar, Benjamin H. Durham, Pallavi Khattar, Neerav N. Shukla, Ryma Benayed, Mario E. Lacouture, Ehud Lavi, David C. Lyden, Eli L. Diamond, Ira J. Dunkel, Omar Abdel-Wahab

Pediatr Blood Cancer. Author manuscript; available in PMC 2019 Jan 1.

Published in final edited form as: Pediatr Blood Cancer. 2018 Jan; 65(1): 10.1002/pbc.26699. Published online 2017 Jul 27. doi: 10.1002/pbc.26699

PMCID:: PMC6053915

Abstract Article PDF–278K

Select item 599523616.

Concomitant driver mutations in advanced EGFR-mutated non-small-cell lung cancer and their impact on erlotinib treatment

Jan Nyrop Jakobsen, Eric Santoni-Rugiu, Morten Grauslund, Linea Melchior, Jens Benn Sørensen

Oncotarget. 2018 May 25; 9(40): 26195–26208. Published online 2018 May 25. doi: 10.18632/oncotarget.25490

PMCID:: PMC5995236

Abstract Article PDF–2.0M

Select item 588520117.

Association Between Circulating Tumor DNA and Pseudoprogression in Patients With Metastatic Melanoma Treated With Anti–Programmed Cell Death 1 Antibodies

Jenny H. Lee, Georgina V. Long, Alexander M. Menzies, Serigne Lo, Alexander Guminski, Kataraina Whitbourne, Michelle Peranec, Richard Scolyer, Richard F. Kefford, Helen Rizos, Matteo S. Carlino

JAMA Oncol. 2018 May; 4(5): 717–721. Published online 2018 Feb 8. doi: 10.1001/jamaoncol.2017.5332

PMCID:: PMC5885201

Abstract Article

Select item 584663318.

Microenvironment-driven resistance to B-Raf inhibition in a melanoma patient is accompanied by broad changes of gene methylation and expression in distal fibroblasts

Ondřej Kodet, Barbora Dvořánková, Běla Bendlová, Vlasta Sýkorová, Ivana Krajsová, Jiří Štork, Jan Kučera, Pavol Szabo, Hynek Strnad, Michal Kolář, Čestmír Vlček, Karel Smetana, Jr, Lukáš Lacina

Int J Mol Med. 2018 May; 41(5): 2687–2703. Published online 2018 Feb 1. doi: 10.3892/ijmm.2018.3448

PMCID:: PMC5846633

Abstract Article PDF–1000K

Select item 584481419.

Acetylsalicylic Acid Governs the Effect of Sorafenib in RAS Mutant Cancers

Heinz Hammerlindl, Dinoop Ravindran Menon, Sabrina Hammerlindl, Abdullah Al Emran, Joachim Torrano, Katrin Sproesser, Divya Thakkar, Min Xiao, Victoria G. Atkinson, Brian Gabrielli, Nikolas K. Haass, Meenhard Herlyn, Clemens Krepler, Helmut Schaider

Clin Cancer Res. Author manuscript; available in PMC 2019 Mar 1.

Published in final edited form as: Clin Cancer Res. 2018 Mar 1; 24(5): 1090–1102. Published online 2017 Dec 1. doi: 10.1158/1078-0432.CCR-16-2118

PMCID:: PMC5844814

Abstract Article PDF–1.0M

Select item 584459220.

Rapid BRAF mutation tests in patients with advanced melanoma: comparison of immunohistochemistry, Droplet Digital PCR, and the Idylla Mutation Platform

Cornelis Bisschop, Arja ter Elst, Lisette J. Bosman, Inge Platteel, Mathilde Jalving, Anke van den Berg, Arjan Diepstra, Bettien van Hemel, Gilles F.H. Diercks, Geke A.P. Hospers, Ed Schuuring

Melanoma Res. 2018 Apr; 28(2): 96–104. Published online 2017 Dec 11. doi: 10.1097/CMR.0000000000000421