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Items: 1 to 20 of 24

1.
Stratified reconstruction of ancestral Escherichia coli diversification
José Maria Gonzalez-Alba, Fernando Baquero, Rafael Cantón, Juan Carlos Galán
BMC Genomics. 2019; 20: 936. Published online 2019 Dec 5. doi: 10.1186/s12864-019-6346-1
PMCID:
PMC6896753
AbstractArticlePDF–1.5M
2.
Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs
Kentaro Miyazaki, Natsuki Tomariguchi
Sci Rep. 2019; 9: 11233. Published online 2019 Aug 2. doi: 10.1038/s41598-019-47807-z
PMCID:
PMC6677816
AbstractArticlePDF–1.6M
3.
The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans
Christina Fassnacht, Cristina Tocchini, Pooja Kumari, Dimos Gaidatzis, Michael B. Stadler, Rafal Ciosk
PLoS Genet. 2018 Mar; 14(3): e1007252. Published online 2018 Mar 26. doi: 10.1371/journal.pgen.1007252
PMCID:
PMC5886687
AbstractArticlePDF–8.0M
4.
Alterations of c‐di‐GMP turnover proteins modulate semi‐constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli
Annika Cimdins, Roger Simm, Fengyang Li, Petra Lüthje, Kaisa Thorell, Åsa Sjöling, Annelie Brauner, Ute Römling
Microbiologyopen. 2017 Oct; 6(5): e00508. Published online 2017 Sep 15. doi: 10.1002/mbo3.508
PMCID:
PMC5635171
AbstractArticlePDF–1.2M
5.
XRN2 Autoregulation and Control of Polycistronic Gene Expresssion in Caenorhabditis elegans
Takashi S. Miki, Sarah H. Carl, Michael B. Stadler, Helge Großhans
PLoS Genet. 2016 Sep; 12(9): e1006313. Published online 2016 Sep 15. doi: 10.1371/journal.pgen.1006313
PMCID:
PMC5025045
AbstractArticlePDF–10M
6.
Microarray long oligo probe designing for Escherichia coli: an in-silico DNA marker extraction
Payam Behzadi, Ali Najafi, Elham Behzadi, Reza Ranjbar
Cent European J Urol. 2016; 69(1): 105–111. Published online 2016 Jan 18. doi: 10.5173/ceju.2016.654
PMCID:
PMC4846717
AbstractArticlePDF–573K
7.
Molecular Characterization of Human Atypical Sorbitol-Fermenting Enteropathogenic Escherichia coli O157 Reveals High Diversity
Annelene Kossow, Wenlan Zhang, Martina Bielaszewska, Sophie Rhode, Kevin Hansen, Angelika Fruth, Christian Rüter, Helge Karch, Alexander Mellmann
J Clin Microbiol. 2016 May; 54(5): 1357–1363. Prepublished online 2016 Mar 16. Published online 2016 Apr 25. doi: 10.1128/JCM.02897-15
PMCID:
PMC4844722
AbstractArticlePDF–2.0M
8.
Extracting DNA words based on the sequence features: non-uniform distribution and integrity
Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang
Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3
PMCID:
PMC4727310
AbstractArticlePDF–785K
9.
Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes
Hao Luo, Feng Gao, Yan Lin
Sci Rep. 2015; 5: 13210. Published online 2015 Aug 14. doi: 10.1038/srep13210
PMCID:
PMC4536490
AbstractArticlePDF–895K
10.
The TRIM-NHL Protein LIN-41 Controls the Onset of Developmental Plasticity in Caenorhabditis elegans
Cristina Tocchini, Jeremy J. Keusch, Sarah B. Miller, Susanne Finger, Heinz Gut, Michael B. Stadler, Rafal Ciosk
PLoS Genet. 2014 Aug; 10(8): e1004533. Published online 2014 Aug 28. doi: 10.1371/journal.pgen.1004533
PMCID:
PMC4148191
AbstractArticlePDF–3.5M
11.
Tackling soil diversity with the assembly of large, complex metagenomes
Adina Chuang Howe, Janet K. Jansson, Stephanie A. Malfatti, Susannah G. Tringe, James M. Tiedje, C. Titus Brown
Proc Natl Acad Sci U S A. 2014 Apr 1; 111(13): 4904–4909. Published online 2014 Mar 14. doi: 10.1073/pnas.1402564111
Correction in:
Proc Natl Acad Sci U S A. 2014 Apr 22; 111(16): 6115.
PMCID:
PMC3977251
AbstractArticlePDF–717K
12.
Draft genome sequences of five recent human uropathogenic Escherichia coli isolates
Sargurunathan Subashchandrabose, Tracy H. Hazen, David A. Rasko, Harry L. T. Mobley
Pathog Dis. Author manuscript; available in PMC 2015 Jan 2.
Published in final edited form as: Pathog Dis. 2013 Oct; 69(1): 66–70. Published online 2013 Oct 1. doi: 10.1111/2049-632X.12059
PMCID:
PMC3843978
AbstractArticlePDF–224K
13.
Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
Eric J de Muinck, Karin Lagesen, Jan Egil Afset, Xavier Didelot, Kjersti S Rønningen, Knut Rudi, Nils Chr Stenseth, Pål Trosvik
BMC Genomics. 2013; 14: 81. Published online 2013 Feb 5. doi: 10.1186/1471-2164-14-81
PMCID:
PMC3637554
AbstractArticlePDF–1.9M
14.
Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food
Xianghe Yan, Joshua B Gurtler, Pina M Fratamico, Jing Hu, Vijay K Juneja
Cell Biosci. 2012; 2: 39. Published online 2012 Nov 27. doi: 10.1186/2045-3701-2-39
PMCID:
PMC3519753
AbstractArticlePDF–2.1M
15.
Phylogenetic Analysis of Non-O157 Shiga Toxin-Producing Escherichia coli Strains by Whole-Genome Sequencing
Wenting Ju, Guojie Cao, Lydia Rump, Errol Strain, Yan Luo, Ruth Timme, Marc Allard, Shaohua Zhao, Eric Brown, Jianghong Meng
J Clin Microbiol. 2012 Dec; 50(12): 4123–4127. doi: 10.1128/JCM.02262-12
PMCID:
PMC3502965
AbstractArticlePDF–822K
16.
Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli
Susan R. Steyert, Jason W. Sahl, Claire M. Fraser, Louise D. Teel, Flemming Scheutz, David A. Rasko
Front Cell Infect Microbiol. 2012; 2: 133. Prepublished online 2012 May 21. Published online 2012 Nov 7. doi: 10.3389/fcimb.2012.00133
PMCID:
PMC3491183
AbstractArticlePDF–2.0M
17.
Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli–Shigella genetic exchange communities
Elizabeth Skippington, Mark A. Ragan
Open Biol. 2012 Sep; 2(9): 120112. doi: 10.1098/rsob.120112
PMCID:
PMC3472396
AbstractArticlePDF–1.5M
18.
Lethal inflammasome activation by a multi-drug resistant pathobiont upon antibiotic disruption of the microbiota
Janelle S. Ayres, Norver J. Trinidad, Russell E. Vance
Nat Med. Author manuscript; available in PMC 2012 Nov 1.
Published in final edited form as: Nat Med. 2012 May; 18(5): 799–806. doi: 10.1038/nm.2729
PMCID:
PMC3472005
AbstractArticlePDF–1.0M
19.
Rapid Genomic-Scale Analysis of Escherichia coli O104:H4 by Using High-Resolution Alternative Methods to Next-Generation Sequencing
Scott A. Jackson, Michael L. Kotewicz, Isha R. Patel, David W. Lacher, Jayanthi Gangiredla, Christopher A. Elkins
Appl Environ Microbiol. 2012 Mar; 78(5): 1601–1605. doi: 10.1128/AEM.07464-11
PMCID:
PMC3294476
AbstractArticlePDF–1.7M
20.
2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment
Man Kit Cheung, Lei Li, Wenyan Nong, Hoi Shan Kwan
BMC Res Notes. 2011; 4: 533. Published online 2011 Dec 13. doi: 10.1186/1756-0500-4-533
PMCID:
PMC3280199
AbstractArticlePDF–1.0M

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