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Select item 25662211.

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

David A. Rasko, M. J. Rosovitz, Garry S. A. Myers, Emmanuel F. Mongodin, W. Florian Fricke, Pawel Gajer, Jonathan Crabtree, Mohammed Sebaihia, Nicholas R. Thomson, Roy Chaudhuri, Ian R. Henderson, Vanessa Sperandio, Jacques Ravel

J Bacteriol. 2008 Oct; 190(20): 6881–6893. Published online 2008 Aug 1. doi: 10.1128/JB.00619-08

PMCID:: PMC2566221

Abstract Article PDF–1.5M

Select item 69923762.

Mouse Genetic Background Affects Transfer of an Antibiotic Resistance Plasmid in the Gastrointestinal Tract

Logan C. Ott, Zachary R. Stromberg, Graham A. J. Redweik, Michael J. Wannemuehler, Melha Mellata

mSphere. 2020 Jan-Feb; 5(1): e00847-19. Published online 2020 Jan 29. doi: 10.1128/mSphere.00847-19

PMCID:: PMC6992376

Abstract Article PDF–1.4M

Select item 66916883.

Amino Acid Substitutions and Differential Gene Expression of Outer Membrane Proteins in Adherent-Invasive Escherichia coli

Carla Camprubí-Font, Belén Ruiz del Castillo, Silvia Barrabés, Luis Martínez-Martínez, Margarita Martinez-Medina

Front Microbiol. 2019; 10: 1707. Published online 2019 Aug 6. doi: 10.3389/fmicb.2019.01707

PMCID:: PMC6691688

Abstract Article PDF–2.4M

Select item 64873114.

Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny

Cameron J. Reid, Matthew Z. DeMaere, Steven P. Djordjevic

Microb Genom. 2019 Mar; 5(3): e000225. Published online 2018 Oct 10. doi: 10.1099/mgen.0.000225

PMCID:: PMC6487311

Abstract Article PDF–2.5M

Select item 59440075.

Short genome report of cellulose-producing commensal Escherichia coli 1094

Joaquin Bernal-Bayard, Laura Gomez-Valero, Aimee Wessel, Varun Khanna, Christiane Bouchier, Jean-Marc Ghigo

Stand Genomic Sci. 2018; 13: 13. Published online 2018 May 9. doi: 10.1186/s40793-018-0316-0

PMCID:: PMC5944007

Abstract Article PDF–1.8M

Select item 59303716.

Landscape-Scale Factors Affecting the Prevalence of Escherichia coli in Surface Soil Include Land Cover Type, Edge Interactions, and Soil pH

Nicholas Dusek, Austin J. Hewitt, Kaycie N. Schmidt, Peter W. Bergholz

Appl Environ Microbiol. 2018 May 15; 84(10): e02714-17. Prepublished online 2018 Mar 9. Published online 2018 May 1. doi: 10.1128/AEM.02714-17

PMCID:: PMC5930371

Abstract Article PDF–1.2M

Select item 54435437.

PanWeb: A web interface for pan-genomic analysis

Yan Pantoja, Kenny Pinheiro, Allan Veras, Fabrício Araújo, Ailton Lopes de Sousa, Luis Carlos Guimarães, Artur Silva, Rommel T. J. Ramos

PLoS One. 2017; 12(5): e0178154. Published online 2017 May 24. doi: 10.1371/journal.pone.0178154

PMCID:: PMC5443543

Abstract Article PDF–1.4M

Select item 53828108.

Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain

Karl A Dunne, Roy R Chaudhuri, Amanda E Rossiter, Irene Beriotto, Douglas F Browning, Derrick Squire, Adam F Cunningham, Jeffrey A Cole, Nicholas Loman, Ian R Henderson

Microb Genom. 2017 Mar; 3(3): mgen000106. Published online 2017 Mar 23. doi: 10.1099/mgen.0.000106

PMCID:: PMC5382810

Abstract Article PDF–6.3M

Select item 53690079.

The ST131 Escherichia coli H22 subclone from human intestinal microbiota: Comparison of genomic and phenotypic traits with those of the globally successful H30 subclone

Marie-Hélène Nicolas-Chanoine, Marie Petitjean, Azucena Mora, Noémie Mayer, Jean-Philippe Lavigne, Olivier Boulet, Véronique Leflon-Guibout, Jorge Blanco, Didier Hocquet

BMC Microbiol. 2017; 17: 71. Published online 2017 Mar 27. doi: 10.1186/s12866-017-0984-8

PMCID:: PMC5369007

Abstract Article PDF–860K

Select item 480323210.

D-Alanine-Controlled Transient Intestinal Mono-Colonization with Non-Laboratory-Adapted Commensal E. coli Strain HS

Miguelangel Cuenca, Simona P. Pfister, Stefanie Buschor, Firuza Bayramova, Sara B. Hernandez, Felipe Cava, Erkin Kuru, Michael S. Van Nieuwenhze, Yves V. Brun, Fernanda M. Coelho, Siegfried Hapfelmeier

PLoS One. 2016; 11(3): e0151872. Published online 2016 Mar 22. doi: 10.1371/journal.pone.0151872

PMCID:: PMC4803232

Abstract Article PDF–1.2M

Select item 472572511.

Genomic Comparative Study of Bovine Mastitis Escherichia coli

Florent Kempf, Cindy Slugocki, Shlomo E. Blum, Gabriel Leitner, Pierre Germon

PLoS One. 2016; 11(1): e0147954. Published online 2016 Jan 25. doi: 10.1371/journal.pone.0147954

PMCID:: PMC4725725

Abstract Article PDF–1.9M

Select item 465123112.

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

Rohan Maddamsetti, Philip J. Hatcher, Stéphane Cruveiller, Claudine Médigue, Jeffrey E. Barrick, Richard E. Lenski

Mol Biol Evol. 2015 Nov; 32(11): 2897–2904. Published online 2015 Jul 20. doi: 10.1093/molbev/msv161

PMCID:: PMC4651231

Abstract Article PDF–307K

Select item 461605713.

Genetic analysis of capsular polysaccharide synthesis gene clusters in 79 capsular types of Klebsiella spp

Yi-Jiun Pan, Tzu-Lung Lin, Chun-Tang Chen, Yi-Yin Chen, Pei-Fang Hsieh, Chun-Ru Hsu, Meng-Chuan Wu, Jin-Town Wang

Sci Rep. 2015; 5: 15573. Published online 2015 Oct 23. doi: 10.1038/srep15573

PMCID:: PMC4616057

Abstract Article PDF–918K

Select item 451723414.

Recombinant transfer in the basic genome of Escherichia coli

Purushottam D. Dixit, Tin Yau Pang, F. William Studier, Sergei Maslov

Proc Natl Acad Sci U S A. 2015 Jul 21; 112(29): 9070–9075. Published online 2015 Jul 7. doi: 10.1073/pnas.1510839112

PMCID:: PMC4517234

Abstract Article PDF–1.0M

Select item 449519715.

Microbial Source Tracking in Adjacent Karst Springs

Shoshanit Ohad, Dalit Vaizel-Ohayon, Meir Rom, Joseph Guttman, Diego Berger, Valeria Kravitz, Shlomo Pilo, Zohar Huberman, Yechezkel Kashi, Efrat Rorman

Appl Environ Microbiol. 2015 Aug; 81(15): 5037–5047. Prepublished online 2015 May 22. Published online 2015 Jul 7. doi: 10.1128/AEM.00855-15

PMCID:: PMC4495197

Abstract Article PDF–2.3M

Select item 439905416.

Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition

Scott A. Beatson, Nouri L. Ben Zakour, Makrina Totsika, Brian M. Forde, Rebecca E. Watts, Amanda N. Mabbett, Jan M. Szubert, Sohinee Sarkar, Minh-Duy Phan, Kate M. Peters, Nicola K. Petty, Nabil-Fareed Alikhan, Mitchell J. Sullivan, Jayde A. Gawthorne, Mitchell Stanton-Cook, Nguyen Thi Khanh Nhu, Teik Min Chong, Wai-Fong Yin, Kok-Gan Chan, Viktoria Hancock, David W. Ussery, Glen C. Ulett, Mark A. Schembri

Infect Immun. 2015 May; 83(5): 1749–1764. Prepublished online 2015 Feb 9. Published online 2015 Apr 15. doi: 10.1128/IAI.02810-14

PMCID:: PMC4399054

Abstract Article PDF–3.7M

Select item 420951417.

Correlation between the genomic o454-nlpD region polymorphisms, virulence gene equipment and phylogenetic group of extraintestinal Escherichia coli (ExPEC) enables pathotyping irrespective of host, disease and source of isolation

Christa Ewers, Flavia Dematheis, Haritha Devi Singamaneni, Nishant Nandanwar, Angelika Fruth, Ines Diehl, Torsten Semmler, Lothar H Wieler

Gut Pathog. 2014; 6: 37. Published online 2014 Sep 16. doi: 10.1186/s13099-014-0037-x

PMCID:: PMC4209514

Abstract Article PDF–1.7M

Select item 407504018.

Escherichia coli Isolates from Inflammatory Bowel Diseases Patients Survive in Macrophages and Activate NLRP3 Inflammasome

Marjorie De la Fuente, Luigi Franchi, Daniela Araya, David Díaz-Jiménez, Mauricio Olivares, Manuel Álvarez-Lobos, Douglas Golenbock, María-Julieta González, Francisco López-Kostner, Rodrigo Quera, Gabriel Núñez, Roberto Vidal, Marcela A. Hermoso

Int J Med Microbiol. Author manuscript; available in PMC 2015 May 1.

Published in final edited form as: Int J Med Microbiol. 2014 May; 304(0): 384–392. Published online 2014 Feb 6. doi: 10.1016/j.ijmm.2014.01.002

Correction in:: volume 305 on page 434

PMCID:: PMC4075040

Abstract Article PDF–902K

Select item 400111119.

Molecular characterization of cytolethal distending toxin gene-positive Escherichia coli from healthy cattle and swine in Nara, Japan

Atsushi Hinenoya, Kensuke Shima, Masahiro Asakura, Kazuhiko Nishimura, Teizo Tsukamoto, Tadasuke Ooka, Tetsuya Hayashi, Thandavarayan Ramamurthy, Shah M Faruque, Shinji Yamasaki

BMC Microbiol. 2014; 14: 97. Published online 2014 Apr 18. doi: 10.1186/1471-2180-14-97

PMCID:: PMC4001111

Abstract Article PDF–741K

Select item 377189620.

Genetic Characterization of Atypical Citrobacter freundii

Gabriela Delgado, Valeria Souza, Rosario Morales, René Cerritos, Andrea González-González, José Luis Méndez, Virginia Vázquez, Alejandro Cravioto

PLoS One. 2013; 8(9): e74120. Published online 2013 Sep 12. doi: 10.1371/journal.pone.0074120

PMCID:: PMC3771896

Abstract Article PDF–1.1M

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