PMC Links for Nucleotide (Select 116513228) - PMC

Select item 16228701.

Comparative genomics of the lactic acid bacteria

K. Makarova, A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D. M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J.-H. Lee, I. Díaz-Muñiz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'Sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, D. Mills

Proc Natl Acad Sci U S A. 2006 Oct 17; 103(42): 15611–15616. Published online 2006 Oct 9. doi: 10.1073/pnas.0607117103

PMCID:: PMC1622870

Abstract Article PDF–311K

Select item 61179002.

Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools

Adeola M. Rotimi, Rian Pierneef, Oleg N. Reva

BMC Bioinformatics. 2018; 19: 309. Published online 2018 Aug 30. doi: 10.1186/s12859-018-2320-1

PMCID:: PMC6117900

Abstract Article PDF–1.8M

Select item 60969393.

Using glycolysis enzyme sequences to inform Lactobacillus phylogeny

Katelyn Brandt, Rodolphe Barrangou

Microb Genom. 2018 Jun; 4(6): e000187. Published online 2018 Jun 22. doi: 10.1099/mgen.0.000187

PMCID:: PMC6096939

Abstract Article PDF–3.5M

Select item 55160014.

Identification and Functional Validation of Autolysis—Associated Genes in Lactobacillus bulgaricus ATCC BAA-365

Xiaoyang Pang, Shuwen Zhang, Jing Lu, Lu Liu, Changlu Ma, Yang Yang, Panpan Ti, Weihua Gao, Jiaping Lv

Front Microbiol. 2017; 8: 1367. Published online 2017 Jul 19. doi: 10.3389/fmicb.2017.01367

PMCID:: PMC5516001

Abstract Article PDF–2.5M

Select item 49591735.

Enhancing the Sweetness of Yoghurt through Metabolic Remodeling of Carbohydrate Metabolism in Streptococcus thermophilus and Lactobacillus delbrueckii subsp. bulgaricus

Kim I. Sørensen, Mirjana Curic-Bawden, Mette P. Junge, Thomas Janzen, Eric Johansen

Appl Environ Microbiol. 2016 Jun 15; 82(12): 3683–3692. Prepublished online 2016 Apr 22. Published online 2016 May 31. doi: 10.1128/AEM.00462-16

PMCID:: PMC4959173

Abstract Article PDF–1.4M

Select item 39101436.

Microbial characterization of probiotics–Advisory report of the Working Group “8651 Probiotics” of the Belgian Superior Health Council (SHC)

Geert Huys, Nadine Botteldoorn, Frank Delvigne, Luc De Vuyst, Marc Heyndrickx, Bruno Pot, Jean-Jacques Dubois, Georges Daube

Mol Nutr Food Res. 2013 Aug; 57(8): 1479–1504. Published online 2013 Jun 25. doi: 10.1002/mnfr.201300065

PMCID:: PMC3910143

Abstract Article PDF–260K

Select item 38159417.

Probiotics genomics

Roland J. Siezen, Greer Wilson

Microb Biotechnol. 2010 Jan; 3(1): 1–9. Published online 2009 Dec 20. doi: 10.1111/j.1751-7915.2009.00159.x

PMCID:: PMC3815941

Article PDF–672K

Select item 38152858.

Genomics of dairy fermentations

Roland J. Siezen, Herwig Bachmann

Microb Biotechnol. 2008 Nov; 1(6): 435–442. Published online 2008 Oct 14. doi: 10.1111/j.1751-7915.2008.00067.x

PMCID:: PMC3815285

Article PDF–234K

Select item 35197539.

Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food

Xianghe Yan, Joshua B Gurtler, Pina M Fratamico, Jing Hu, Vijay K Juneja

Cell Biosci. 2012; 2: 39. Published online 2012 Nov 27. doi: 10.1186/2045-3701-2-39

PMCID:: PMC3519753

Abstract Article PDF–2.1M

Select item 343681510.

Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics

Yu-Wei Wu, Mina Rho, Thomas G. Doak, Yuzhen Ye

Bioinformatics. 2012 Sep 15; 28(18): i363–i369. Published online 2012 Sep 3. doi: 10.1093/bioinformatics/bts388

PMCID:: PMC3436815

Abstract Article PDF–491K

Select item 317987711.

Vaginal Microbiota of Healthy Pregnant Mexican Women is Constituted by Four Lactobacillus Species and Several Vaginosis-Associated Bacteria

César Hernández-Rodríguez, Roberto Romero-González, Mario Albani-Campanario, Ricardo Figueroa-Damián, Noemí Meraz-Cruz, César Hernández-Guerrero

Infect Dis Obstet Gynecol. 2011; 2011: 851485. Published online 2011 Sep 22. doi: 10.1155/2011/851485

PMCID:: PMC3179877

Abstract Article PDF–1.7M

Select item 302422712.

Phylogenomic reconstruction of lactic acid bacteria: an update

Zhi-Gang Zhang, Zhi-Qiang Ye, Li Yu, Peng Shi

BMC Evol Biol. 2011; 11: 1. Published online 2011 Jan 1. doi: 10.1186/1471-2148-11-1

PMCID:: PMC3024227

Abstract Article PDF–604K

Select item 302202113.

Complete Sequencing and Pan-Genomic Analysis of Lactobacillus delbrueckii subsp. bulgaricus Reveal Its Genetic Basis for Industrial Yogurt Production

Pei Hao, Huajun Zheng, Yao Yu, Guohui Ding, Wenyi Gu, Shuting Chen, Zhonghao Yu, Shuangxi Ren, Munehiro Oda, Tomonobu Konno, Shengyue Wang, Xuan Li, Zai-Si Ji, Guoping Zhao

PLoS One. 2011; 6(1): e15964. Published online 2011 Jan 17. doi: 10.1371/journal.pone.0015964

PMCID:: PMC3022021

Abstract Article PDF–2.0M

Select item 298861214.

Mixed-Culture Transcriptome Analysis Reveals the Molecular Basis of Mixed-Culture Growth in Streptococcus thermophilus and Lactobacillus bulgaricus

Sander Sieuwerts, Douwe Molenaar, Sacha A. F. T. van Hijum, Marke Beerthuyzen, Marc J. A. Stevens, Patrick W. M. Janssen, Colin J. Ingham, Frank A. M. de Bok, Willem M. de Vos, Johan E. T. van Hylckama Vlieg

Appl Environ Microbiol. 2010 Dec; 76(23): 7775–7784. Published online 2010 Oct 1. doi: 10.1128/AEM.01122-10

PMCID:: PMC2988612

Abstract Article PDF–281K

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