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Select item 79387701.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 74159902.

The mitochondrial metal transporters mitoferrin1 and mitoferrin2 are required for liver regeneration and cell proliferation in mice

Alexandra Seguin, Xuan Jia, Aubree M. Earl, Liangtao Li, Jared Wallace, Andong Qiu, Thomas Bradley, Rishna Shrestha, Marie-Bérengère Troadec, Matt Hockin, Simon Titen, Dave E. Warner, P. Tom Dowdle, Martin E. Wohlfahrt, Elaine Hillas, Matthew A. Firpo, John D. Phillips, Jerry Kaplan, Barry H. Paw, Jonathan Barasch, Diane M. Ward

J Biol Chem. 2020 Aug 7; 295(32): 11002–11020. Published online 2020 Jun 9. doi: 10.1074/jbc.RA120.013229

PMCID:: PMC7415990

Abstract Article PDF–5.7M

Select item 72547433.

Mitoferrin-1 is required for brain energy metabolism and hippocampus-dependent memory

Lisa Baldauf, Thomas Endres, Johannes Scholz, Elmar Kirches, Diane M. Ward, Volkmar Lessmann, Katrin Borucki, Christian Mawrin

Neurosci Lett. Author manuscript; available in PMC 2020 May 28.

Published in final edited form as: Neurosci Lett. 2019 Nov 20; 713: 134521. Published online 2019 Sep 26. doi: 10.1016/j.neulet.2019.134521

PMCID:: PMC7254743

Abstract Article PDF–1.1M

Select item 39532954.

Iron Regulatory Protein-1 Protects against Mitoferrin-1-deficient Porphyria

Jacky Chung, Sheila A. Anderson, Babette Gwynn, Kathryn M. Deck, Michael J. Chen, Nathaniel B. Langer, George C. Shaw, Nicholas C. Huston, Leah F. Boyer, Sumon Datta, Prasad N. Paradkar, Liangtao Li, Zong Wei, Amy J. Lambert, Kenneth Sahr, Johannes G. Wittig, Wen Chen, Wange Lu, Bruno Galy, Thorsten M. Schlaeger, Matthias W. Hentze, Diane M. Ward, Jerry Kaplan, Richard S. Eisenstein, Luanne L. Peters, Barry H. Paw

J Biol Chem. 2014 Mar 14; 289(11): 7835–7843. Published online 2014 Feb 7. doi: 10.1074/jbc.M114.547778

Correction in:: J Biol Chem. 2014 May 16; 289(20): 13707.

PMCID:: PMC3953295

Abstract Article PDF–1.4M

Select item 33740755.

The mitochondrial transporter ABC-me (ABCB10), a downstream target of GATA-1, is essential for erythropoiesis in vivo

B B Hyde, M Liesa, A A Elorza, W Qiu, S E Haigh, L Richey, H K Mikkola, T M Schlaeger, O S Shirihai

Cell Death Differ. 2012 Jul; 19(7): 1117–1126. Published online 2012 Jan 13. doi: 10.1038/cdd.2011.195

PMCID:: PMC3374075

Abstract Article PDF–646K

Select item 33242946.

Ferrochelatase forms an oligomeric complex with mitoferrin-1 and Abcb10 for erythroid heme biosynthesis

Wen Chen, Harry A. Dailey, Barry H. Paw

Blood. 2010 Jul 29; 116(4): 628–630. Prepublished online 2010 Apr 28. doi: 10.1182/blood-2009-12-259614

PMCID:: PMC3324294

Abstract Article

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 31353058.

Identification of Distal cis-Regulatory Elements at Mouse Mitoferrin Loci Using Zebrafish Transgenesis

Julio D. Amigo, Ming Yu, Marie-Berengere Troadec, Babette Gwynn, Jeffrey D. Cooney, Amy J. Lambert, Neil C. Chi, Mitchell J. Weiss, Luanne L. Peters, Jerry Kaplan, Alan B. Cantor, Barry H. Paw

Mol Cell Biol. 2011 Apr; 31(7): 1344–1356. doi: 10.1128/MCB.01010-10

PMCID:: PMC3135305

Abstract Article PDF–4.1M

Select item 31097209.

Targeted deletion of the mouse Mitoferrin1 gene: from anemia to protoporphyria

Marie-Berengere Troadec, David Warner, Jared Wallace, Kirk Thomas, Gerald J. Spangrude, John Phillips, Oleh Khalimonchuk, Barry H. Paw, Diane McVey Ward, Jerry Kaplan

Blood. 2011 May 19; 117(20): 5494–5502. Prepublished online 2011 Feb 10. doi: 10.1182/blood-2010-11-319483

PMCID:: PMC3109720

Abstract Article

Select item 302253410.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 290956911.

A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells

Michael R. Tallack, Tom Whitington, Wai Shan Yuen, Elanor N. Wainwright, Janelle R. Keys, Brooke B. Gardiner, Ehsan Nourbakhsh, Nicole Cloonan, Sean M. Grimmond, Timothy L. Bailey, Andrew C. Perkins

Genome Res. 2010 Aug; 20(8): 1052–1063. doi: 10.1101/gr.106575.110

Correction in:: Genome Res. 2010 Dec; 20(12): 1748.

PMCID:: PMC2909569

Abstract Article PDF–1.0M

Select item 277884412.

A mitochondrial protein compendium elucidates complex I disease biology

David J. Pagliarini, Sarah E. Calvo, Betty Chang, Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha

Cell. Author manuscript; available in PMC 2009 Nov 18.

Published in final edited form as: Cell. 2008 Jul 11; 134(1): 112–123. doi: 10.1016/j.cell.2008.06.016

PMCID:: PMC2778844

Abstract Article PDF–1.2M

Select item 275256213.

Abcb10 physically interacts with mitoferrin-1 (Slc25a37) to enhance its stability and function in the erythroid mitochondria

Wen Chen, Prasad N. Paradkar, Liangtao Li, Eric L. Pierce, Nathaniel B. Langer, Naoko Takahashi-Makise, Brigham B. Hyde, Orian S. Shirihai, Diane M. Ward, Jerry Kaplan, Barry H. Paw

Proc Natl Acad Sci U S A. 2009 Sep 22; 106(38): 16263–16268. Published online 2009 Sep 4. doi: 10.1073/pnas.0904519106

PMCID:: PMC2752562

Abstract Article PDF–1.3M

Select item 264380414.

Regulation of Mitochondrial Iron Import through Differential Turnover of Mitoferrin 1 and Mitoferrin 2

Prasad N. Paradkar, Kimberley B. Zumbrennen, Barry H. Paw, Diane M. Ward, Jerry Kaplan

Mol Cell Biol. 2009 Feb; 29(4): 1007–1016. Published online 2008 Dec 15. doi: 10.1128/MCB.01685-08

PMCID:: PMC2643804

Abstract Article PDF–1.8M

Select item 263728215.

Differential RelA- and RelB-dependent gene transcription in LTβR-stimulated mouse embryonic fibroblasts

Agnes Lovas, Dörte Radke, Daniela Albrecht, Z Buket Yilmaz, Ulrich Möller, Andreas JR Habenicht, Falk Weih

BMC Genomics. 2008; 9: 606. Published online 2008 Dec 16. doi: 10.1186/1471-2164-9-606

PMCID:: PMC2637282

Abstract Article PDF–895K

Select item 255627016.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 141356817.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 43978318.

Genomic Analysis of Mouse Retinal Development

Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko

PLoS Biol. 2004 Sep; 2(9): e247. Published online 2004 Jun 29. doi: 10.1371/journal.pbio.0020247

PMCID:: PMC439783

Abstract Article PDF–975K

Select item 31099219.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098020.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

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