PMC Links for GEO Profiles (Select 59516290) - PMC

Rossella Tricarico, Salvatore Cortellino, Antonio Riccio, Shantie Jagmohan-Changur, Heleen van der Klift, Juul Wijnen, David Turner, Andrea Ventura, Valentina Rovella, Antonio Percesepe, Emanuela Lucci-Cordisco, Paolo Radice, Lucio Bertario, Monica Pedroni, Maurizio Ponz de Leon, Pietro Mancuso, Karthik Devarajan, Kathy Q. Cai, Andres J.P. Klein-Szanto, Giovanni Neri, Pål Møller, Alessandra Viel, Maurizio Genuardi, Riccardo Fodde, Alfonso Bellacosa

Oncotarget. 2015 Dec 15; 6(40): 42892–42904. Published online 2015 Oct 16. doi: 10.18632/oncotarget.5740

PMCID:: PMC4767479

Abstract Article PDF–3.5M

Select item 38637156.

Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway

Petra Hajkova, Sean J. Jeffries, Caroline Lee, Nigel Miller, Stephen P. Jackson, M. Azim Surani

Science. Author manuscript; available in PMC 2013 Dec 16.

Published in final edited form as: Science. 2010 Jul 2; 329(5987): 10.1126/science.1187945. doi: 10.1126/science.1187945

PMCID:: PMC3863715

Abstract Article PDF–2.1M

Select item 38257517.

Catalog of mRNA expression patterns for DNA methylating and demethylating genes in developing mouse lower urinary tract

Kimberly P. Keil, Helene M. Altmann, Vatsal Mehta, Lisa L. Abler, Erik A. Elton, Chad M. Vezina

Gene Expr Patterns. Author manuscript; available in PMC 2014 Dec 1.

Published in final edited form as: Gene Expr Patterns. 2013 Dec; 13(8): 10.1016/j.gep.2013.07.008. Published online 2013 Aug 3. doi: 10.1016/j.gep.2013.07.008

PMCID:: PMC3825751

Abstract Article PDF–7.2M

Select item 38121568.

Complex Relationship between Mismatch Repair Proteins and MBD4 during Immunoglobulin Class Switch Recombination

Fernando Grigera, Alfonso Bellacosa, Amy L. Kenter

PLoS One. 2013; 8(10): e78370. Published online 2013 Oct 29. doi: 10.1371/journal.pone.0078370

PMCID:: PMC3812156

Abstract Article PDF–828K

Select item 35850709.

Structural Basis of the Versatile DNA Recognition Ability of the Methyl-CpG Binding Domain of Methyl-CpG Binding Domain Protein 4

Junji Otani, Kyohei Arita, Tsuyoshi Kato, Mariko Kinoshita, Hironobu Kimura, Isao Suetake, Shoji Tajima, Mariko Ariyoshi, Masahiro Shirakawa

J Biol Chem. 2013 Mar 1; 288(9): 6351–6362. Published online 2013 Jan 10. doi: 10.1074/jbc.M112.431098

PMCID:: PMC3585070

Abstract Article PDF–3.4M

Select item 345856610.

Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation

Hideharu Hashimoto, Xing Zhang, Xiaodong Cheng

Nucleic Acids Res. 2012 Sep; 40(17): 8276–8284. Published online 2012 Jun 27. doi: 10.1093/nar/gks628

PMCID:: PMC3458566

Abstract Article PDF–8.7M

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 276423212.

Mismatch Repair in Methylated DNA: STRUCTURE AND ACTIVITY OF THE MISMATCH-SPECIFIC THYMINE GLYCOSYLASE DOMAIN OF METHYL-CpG-BINDING PROTEIN MBD4

Peiying Wu, Chen Qiu, Anjum Sohail, Xing Zhang, Ashok S. Bhagwat, Xiaodong Cheng

J Biol Chem. Author manuscript; available in PMC 2009 Oct 20.

Published in final edited form as: J Biol Chem. 2003 Feb 14; 278(7): 5285–5291. Published online 2002 Nov 26. doi: 10.1074/jbc.M210884200

PMCID:: PMC2764232

Abstract Article PDF–3.0M

Select item 272934213.

MBD4 and MLH1 are required for apoptotic induction in xDNMT1-depleted embryos

Alexey Ruzov, Boris Shorning, Oliver Mortusewicz, Donncha S. Dunican, Heinrich Leonhardt, Richard R. Meehan

Development. 2009 Jul 1; 136(13): 2277–2286. Published online 2009 Jun 5. doi: 10.1242/dev.032227

PMCID:: PMC2729342

Abstract Article

Select item 270544114.

Characterization of Dnmt3b:thymine-DNA glycosylase interaction and stimulation of thymine glycosylase-mediated repair by DNA methyltransferase(s) and RNA

Michael J. Boland, Judith K. Christman

J Mol Biol. Author manuscript; available in PMC 2009 Jul 2.

Published in final edited form as: J Mol Biol. 2008 Jun 6; 379(3): 492–504. Published online 2008 Feb 29. doi: 10.1016/j.jmb.2008.02.049

PMCID:: PMC2705441

Abstract Article PDF–1.0M

Select item 264504215.

Defective ciliogenesis, embryonic lethality and severe impairment of the Sonic Hedgehog pathway caused by inactivation of the mouse complex A intraflagellar transport gene Ift122/Wdr10, partially overlapping with the DNA repair gene Med1/Mbd4

Salvatore Cortellino, Chengbing Wang, Baolin Wang, Maria Rosaria Bassi, Elena Caretti, Delphine Champeval, Amelie Calmont, Michal Jarnik, John Burch, Kenneth Zaret, Lionel Larue, Alfonso Bellacosa

Dev Biol. Author manuscript; available in PMC 2010 Jan 1.

Published in final edited form as: Dev Biol. 2009 Jan 1; 325(1): 225–237. Published online 2008 Oct 29. doi: 10.1016/j.ydbio.2008.10.020

PMCID:: PMC2645042

Abstract Article PDF–3.6M

Select item 255627016.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 169369217.

The mediator complex functions as a coactivator for GATA-1 in erythropoiesis via subunit Med1/TRAP220

Melanie Stumpf, Claudia Waskow, Marit Krötschel, Dominic van Essen, Patrick Rodriguez, Xiaoting Zhang, Boris Guyot, Robert G. Roeder, Tilman Borggrefe

Proc Natl Acad Sci U S A. 2006 Dec 5; 103(49): 18504–18509. Published online 2006 Nov 28. doi: 10.1073/pnas.0604494103

Correction in:: Proc Natl Acad Sci U S A. 2007 Jan 23; 104(4): 1442.

PMCID:: PMC1693692

Abstract Article PDF–1.2M

Select item 141356818.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 52892819.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099220.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

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PMC Links for GEO Profiles (Select 59516290) (25)
PMC
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guan...
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL [Mannheimia haemolytica USDA-ARS-USMARC-184]
gi|748239762|gb|AJE08981.1||gnl|PRJ 854|B824_21860

Protein
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guan...
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL [Escherichia coli]
gi|2809323104|gnl|PRJNA1160296|ACE1 570|gb|XHG57159.1|

Protein
AGENCOURT_6464649 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:5581457 5', mRNA sequ...
AGENCOURT_6464649 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:5581457 5', mRNA sequence
gi|18520721|gnl|dbEST|11042307|gb|B 79.1|

Nucleotide

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