PMC Links for GEO Profiles (Select 56473880) - PMC

Result Filters

Links from GEO Profiles

Items: 1 to 20 of 33

<< First< Prev

Page of 2

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39893442.

A Mutant of Uracil DNA Glycosylase That Distinguishes between Cytosine and 5-Methylcytosine

Scott T. Kimber, Tom Brown, Keith R. Fox

PLoS One. 2014; 9(4): e95394. Published online 2014 Apr 16. doi: 10.1371/journal.pone.0095394

PMCID:: PMC3989344

Abstract Article PDF–633K

Select item 32493333.

Mechanism of translocation of uracil-DNA glycosylase from Escherichia coli between distributed lesions

Grigory V. Mechetin, Dmitry O. Zharkov

Biochem Biophys Res Commun. Author manuscript; available in PMC 2012 Oct 22.

Published in final edited form as: Biochem Biophys Res Commun. 2011 Oct 22; 414(2): 425–430. Published online 2011 Sep 28. doi: 10.1016/j.bbrc.2011.09.106

PMCID:: PMC3249333

Abstract Article PDF–600K

Select item 30401204.

Quantitative determination of uracil residues in Escherichia coli DNA: Contribution of ung, dug, and dut genes to uracil avoidance

Sibghat-Ullah Lari, Cheng-Yao Chen, Béata G. Vertéssy, Jeff Morré, Samuel E. Bennett

DNA Repair (Amst) Author manuscript; available in PMC 2011 Feb 16.

Published in final edited form as: DNA Repair (Amst). 2006 Dec 9; 5(12): 1407–1420. Published online 2006 Aug 14. doi: 10.1016/j.dnarep.2006.06.009

PMCID:: PMC3040120

Abstract Article PDF–2.3M

Select item 28531245.

Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli

Sanjay Kumar Bharti, Umesh Varshney

Nucleic Acids Res. 2010 Apr; 38(7): 2291–2301. Published online 2010 Jan 7. doi: 10.1093/nar/gkp1210

PMCID:: PMC2853124

Abstract Article PDF–847K

Select item 27866126.

Polyphosphate Accumulation in Escherichia coli in Response to Defects in DNA Metabolism

Luciana Amado, Andrei Kuzminov

J Bacteriol. 2009 Dec; 191(24): 7410–7416. Published online 2009 Oct 16. doi: 10.1128/JB.01138-09

PMCID:: PMC2786612

Abstract Article PDF–1.1M

Select item 27540447.

Enzymatic Capture of a Transient Extrahelical Thymine in the Search for Uracil in DNA

Jared B. Parker, Mario A. Bianchet, Daniel J. Krosky, Joshua I. Friedman, L. Mario Amzel, James T. Stivers

Nature. Author manuscript; available in PMC 2009 Sep 29.

Published in final edited form as: Nature. 2007 Sep 27; 449(7161): 433–437. Published online 2007 Aug 19. doi: 10.1038/nature06131

PMCID:: PMC2754044

Abstract Article PDF–2.4M

Select item 27297158.

Uracil DNA Glycosylase: Revisiting Substrate-Assisted Catalysis by DNA Phosphate Anions

Jared B. Parker, James T. Stivers

Biochemistry. Author manuscript; available in PMC 2009 Aug 20.

Published in final edited form as: Biochemistry. 2008 Aug 19; 47(33): 8614–8622. Published online 2008 Jul 25. doi: 10.1021/bi800854g

PMCID:: PMC2729715

Abstract Article PDF–1.2M

Select item 26726149.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 263549210.

Competitive Inhibition of Uracil DNA Glycosylase by a Modified Nucleotide Whose Triphosphate is a Substrate for DNA Polymerase

Haidong Huang, James T. Stivers, Marc M. Greenberg

J Am Chem Soc. Author manuscript; available in PMC 2010 Feb 4.

Published in final edited form as: J Am Chem Soc. 2009 Feb 4; 131(4): 1344–1345. doi: 10.1021/ja807705z

PMCID:: PMC2635492

Abstract Article PDF–708K

Select item 251953311.

Synthetic Lethality with the dut Defect in Escherichia coli Reveals Layers of DNA Damage of Increasing Complexity Due to Uracil Incorporation

Helen Ting, Elena A. Kouzminova, Andrei Kuzminov

J Bacteriol. 2008 Sep; 190(17): 5841–5854. Published online 2008 Jun 27. doi: 10.1128/JB.00711-08

PMCID:: PMC2519533

Abstract Article PDF–1.1M

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 144809913.

Stress and Survival of Aging Escherichia coli rpoS Colonies

Claude Saint-Ruf, François Taddei, Ivan Matic

Genetics. 2004 Sep; 168(1): 541–546. doi: 10.1534/genetics.104.028704

PMCID:: PMC1448099

Abstract Article PDF–137K

Select item 132520014.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405