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Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 106817462.

LSM14B is essential for oocyte meiotic maturation by regulating maternal mRNA storage and clearance

Yanling Wan, Shuang Yang, Tongtong Li, Yuling Cai, Xinyue Wu, Mingyu Zhang, Tahir Muhammad, Tao Huang, Yue Lv, Wai-Yee Chan, Gang Lu, Jingxin Li, Qian-Qian Sha, Zi-Jiang Chen, Hongbin Liu

Nucleic Acids Res. 2023 Nov 27; 51(21): 11652–11667. Published online 2023 Oct 27. doi: 10.1093/nar/gkad919

PMCID:: PMC10681746

Abstract Article PDF–2.3M

Select item 85718003.

Mechanism of noncoding RNA associated N⁶-Methyladenosine recognition by an RNA processing complex during IgH DNA recombination

Lekha Nair, Wanwei Zhang, Brice Laffleur, Mukesh Kumar Jha, Junghyun Lim, Heather Lee, Lijing Wu, Nehemiah S. Alvarez, Zhi-ping Liu, Emilia Laura Munteanu, Theresa Swayne, Jacob H. Hanna, Lei Ding, Gerson Rothschild, Uttiya Basu

Mol Cell. Author manuscript; available in PMC 2022 Oct 7.

Published in final edited form as: Mol Cell. 2021 Oct 7; 81(19): 3949–3964.e7. Published online 2021 Aug 26. doi: 10.1016/j.molcel.2021.07.037

PMCID:: PMC8571800

Abstract Article PDF–3.3M

Select item 79387704.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 78887095.

Post-transcriptional regulation by the exosome complex is required for cell survival and forebrain development via repression of P53 signaling

Pauline Antonie Ulmke, Yuanbin Xie, Godwin Sokpor, Linh Pham, Orr Shomroni, Tea Berulava, Joachim Rosenbusch, Uttiya Basu, Andre Fischer, Huu Phuc Nguyen, Jochen F. Staiger, Tran Tuoc

Development. 2021 Feb 1; 148(3): dev188276. Published online 2021 Feb 8. doi: 10.1242/dev.188276

PMCID:: PMC7888709

Abstract Article

Select item 62179886.

The RNA exosome syncs IAV-RNAPII transcription to promote viral ribogenesis and infectivity.

Alexander Rialdi, Judd Hultquist, David Jimenez Morales, Zuleyma Peralta, Laura Campisi, Romain Fenouil, Natasha Moshkina, Zhen Zhen Wang, Brice Laffleur, Robyn Michael, Kelsey Haas, Evangelos Pefanis, Randy A. Albrecht, Lars Pache, Sumit Chanda, Joanna Jen, Jordi Ochando, Minji Byun, Uttiya Basu, Adolfo Garcia-Sastre, Nevan Krogan, Harm van Bakel, Ivan Marazzi

Cell. Author manuscript; available in PMC 2018 Nov 5.

Published in final edited form as: Cell. 2017 May 4; 169(4): 679–692.e14. doi: 10.1016/j.cell.2017.04.021

PMCID:: PMC6217988

Abstract Article PDF–1.1M

Select item 55152527.

Nuclear Proximity of Mtr4 with RNA exosome restricts DNA mutational asymmetry

Junghyun Lim, Pankaj Kumar Giri, David Kazadi, Brice Laffleur, Wanwei Zhang, Veronika Grinstein, Evangelos Pefanis, Lewis M. Brown, Erik Ladewig, Ophélie Martin, Yuling Chen, Raul Rabadan, François Boyer, Gerson Rothschild, Michel Cogné, Eric Pinaud, Haiteng Deng, Uttiya Basu

Cell. Author manuscript; available in PMC 2018 Apr 20.

Published in final edited form as: Cell. 2017 Apr 20; 169(3): 523–537.e15. doi: 10.1016/j.cell.2017.03.043

PMCID:: PMC5515252

Abstract Article PDF–1.3M

Select item 52958218.

High-throughput discovery of novel developmental phenotypes

Mary E. Dickinson, Ann M. Flenniken, Xiao Ji, Lydia Teboul, Michael D. Wong, Jacqueline K. White, Terrence F. Meehan, Wolfgang J. Weninger, Henrik Westerberg, Hibret Adissu, Candice N. Baker, Lynette Bower, James M. Brown, L. Brianna Caddle, Francesco Chiani, Dave Clary, James Cleak, Mark J. Daly, James M. Denegre, Brendan Doe, Mary E. Dolan, Sarah M. Edie, Helmut Fuchs, Valerie Gailus-Durner, Antonella Galli, Alessia Gambadoro, Juan Gallegos, Shiying Guo, Neil R. Horner, Chih-wei Hsu, Sara J. Johnson, Sowmya Kalaga, Lance C. Keith, Louise Lanoue, Thomas N. Lawson, Monkol Lek, Manuel Mark, Susan Marschall, Jeremy Mason, Melissa L. McElwee, Susan Newbigging, Lauryl M.J. Nutter, Kevin A. Peterson, Ramiro Ramirez-Solis, Douglas J. Rowland, Edward Ryder, Kaitlin E. Samocha, John R. Seavitt, Mohammed Selloum, Zsombor Szoke-Kovacs, Masaru Tamura, Amanda G Trainor, Ilinca Tudose, Shigeharu Wakana, Jonathan Warren, Olivia Wendling, David B. West, Leeyean Wong, Atsushi Yoshiki, The International Mouse Phenotyping Consortium, Daniel G. MacArthur, Glauco P. Tocchini-Valentini, Xiang Gao, Paul Flicek, Allan Bradley, William C. Skarnes, Monica J. Justice, Helen E. Parkinson, Mark Moore, Sara Wells, Robert E. Braun, Karen L. Svenson, Martin Hrabe de Angelis, Yann Herault, Tim Mohun, Ann-Marie Mallon, R. Mark Henkelman, Steve D.M. Brown, David J. Adams, K.C. Kent Lloyd, Colin McKerlie, Arthur L. Beaudet, Maja Bucan, Stephen A. Murray

Nature. Author manuscript; available in PMC 2017 Mar 14.

Published in final edited form as: Nature. 2016 Sep 22; 537(7621): 508–514. Published online 2016 Sep 14. doi: 10.1038/nature19356

Correction in:: Nature. 2017 Nov 16; 551(7680): 398.

PMCID:: PMC5295821

Abstract Article PDF–3.0M

Select item 52909909.

Widespread and dynamic translational control of red blood cell development

Juan R. Alvarez-Dominguez, Xu Zhang, Wenqian Hu

Blood. 2017 Feb 2; 129(5): 619–629. Prepublished online 2016 Nov 29. doi: 10.1182/blood-2016-09-741835

PMCID:: PMC5290990

Abstract Article

Select item 442867110.

RNA exosome regulated long non-coding RNA transcription controls super-enhancer activity

Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, David Kazadi, Jianbo Sun, Alexander Federation, Jaime Chao, Oliver Elliott, Zhi-Ping Liu, Aris N. Economides, James E. Bradner, Raul Rabadan, Uttiya Basu

Cell. Author manuscript; available in PMC 2016 May 7.

Published in final edited form as: Cell. 2015 May 7; 161(4): 774–789. doi: 10.1016/j.cell.2015.04.034

PMCID:: PMC4428671

Abstract Article PDF–737K

Select item 437224011.

Noncoding RNA transcription targets AID to divergently transcribed loci in B cells

Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, Jaime Chao, Raul Rabadan, Aris N. Economides, Uttiya Basu

Nature. Author manuscript; available in PMC 2015 Mar 24.

Published in final edited form as: Nature. 2014 Oct 16; 514(7522): 389–393. Published online 2014 Aug 6. doi: 10.1038/nature13580

PMCID:: PMC4372240

Abstract Article PDF–1.5M

Select item 375969812.

E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells

Jianbo Sun, Celia D. Keim, Jiguang Wang, David Kazadi, Paula M. Oliver, Raul Rabadan, Uttiya Basu

Genes Dev. 2013 Aug 15; 27(16): 1821–1833. doi: 10.1101/gad.210211.112

PMCID:: PMC3759698

Abstract Article PDF–1.3M

Select item 375220413.

Conditionals by inversion provide a universal method for the generation of conditional alleles

Aris N. Economides, David Frendewey, Peter Yang, Melissa G. Dominguez, Anthony T. Dore, Ivan B. Lobov, Trikaldarshi Persaud, Jose Rojas, Joyce McClain, Peter Lengyel, Gustavo Droguett, Rostislav Chernomorsky, Sean Stevens, Wojtek Auerbach, Thomas M. DeChiara, William Pouyemirou, Joseph M. Cruz, Jr., Kieran Feeley, Ian A. Mellis, Jason Yasenchack, Sarah J. Hatsell, LiQin Xie, Esther Latres, Lily Huang, Yuhong Zhang, Evangelos Pefanis, Dimitris Skokos, Ron A. Deckelbaum, Susan D. Croll, Samuel Davis, David M. Valenzuela, Nicholas W. Gale, Andrew J. Murphy, George D. Yancopoulos

Proc Natl Acad Sci U S A. 2013 Aug 20; 110(34): E3179–E3188. Published online 2013 Aug 5. doi: 10.1073/pnas.1217812110

PMCID:: PMC3752204

Abstract Article PDF–1.8M

Select item 359005514.

Pontocerebellar hypoplasia type 1: Clinical spectrum and relevance of EXOSC3 mutations

Sabine Rudnik-Schöneborn, Jan Senderek, Joanna C. Jen, Gunnar Houge, Pavel Seeman, Alena Puchmajerová, Luitgard Graul-Neumann, Ulrich Seidel, Rudolf Korinthenberg, Janbernd Kirschner, Jürgen Seeger, Monique M. Ryan, Francesco Muntoni, Maja Steinlin, Laszlo Sztriha, Jaume Colomer, Christoph Hübner, Knut Brockmann, Lionel Van Maldergem, Manuel Schiff, Andreas Holzinger, Peter Barth, William Reardon, Michael Yourshaw, Stanley F. Nelson, Thomas Eggermann, Klaus Zerres

Neurology. 2013 Jan 29; 80(5): 438–446. doi: 10.1212/WNL.0b013e31827f0f66

PMCID:: PMC3590055

Abstract Article PDF–574K

Select item 317805915.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 306511416.

The RNA Exosome Targets the AID Cytidine Deaminase to Both Strands of Transcribed Duplex DNA Substrates

Uttiya Basu, Fei-Long Meng, Celia Keim, Veronika Grinstein, Evangelos Pefanis, Jennifer Eccleston, Tingting Zhang, Darienne Myers, Duane R. Wesemann, Kurt Januszyk, Richard I. Gregory, Haiteng Deng, Christopher D. Lima, Frederick W. Alt

Cell. Author manuscript; available in PMC 2011 Aug 4.

Published in final edited form as: Cell. 2011 Feb 4; 144(3): 353–363. Published online 2011 Jan 20. doi: 10.1016/j.cell.2011.01.001

PMCID:: PMC3065114

Abstract Article PDF–2.9M

Select item 302253417.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 291027118.

The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L

Rafal Tomecki, Maiken S Kristiansen, Søren Lykke-Andersen, Aleksander Chlebowski, Katja M Larsen, Roman J Szczesny, Karolina Drazkowska, Agnieszka Pastula, Jens S Andersen, Piotr P Stepien, Andrzej Dziembowski, Torben Heick Jensen

EMBO J. 2010 Jul 21; 29(14): 2342–2357. Published online 2010 Jun 8. doi: 10.1038/emboj.2010.121

PMCID:: PMC2910271

Abstract Article PDF–2.7M

Select item 255627019.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108