PMC Links for GEO Profiles (Select 18791604) - PMC

Select item 80433911.

Lack of collagen α6(IV) chain in mice does not cause severe-to-profound hearing loss or cochlear malformation, a distinct phenotype from nonsyndromic hearing loss with COL4A6 missense mutation

Shaoying Tang, Tomoko Yonezawa, Yukihide Maeda, Mitsuaki Ono, Takahiro Maeba, Toru Miyoshi, Ryusuke Momota, Yasuko Tomono, Toshitaka Oohashi

PLoS One. 2021; 16(4): e0249909. Published online 2021 Apr 13. doi: 10.1371/journal.pone.0249909

PMCID:: PMC8043391

Abstract Article PDF–3.2M

Select item 58057782.

Type IV collagen α6 chain is a regulator of keratin 10 in keratinization of oral mucosal epithelium

Taishi Komori, Mitsuaki Ono, Emilio Satoshi Hara, Junji Ueda, Ha Thi Thu Nguyen, Ha Thi Nguyen, Tomoko Yonezawa, Takahiro Maeba, Aya Kimura-Ono, Takeshi Takarada, Ryusuke Momota, Kenji Maekawa, Takuo Kuboki, Toshitaka Oohashi

Sci Rep. 2018; 8: 2612. Published online 2018 Feb 8. doi: 10.1038/s41598-018-21000-0

PMCID:: PMC5805778

Abstract Article PDF–2.3M

Select item 52231593.

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression

Alexandra Naba, Karl R. Clauser, D. R. Mani, Steven A. Carr, Richard O. Hynes

Sci Rep. 2017; 7: 40495. Published online 2017 Jan 10. doi: 10.1038/srep40495

PMCID:: PMC5223159

Abstract Article PDF–2.3M

Select item 49325214.

COL4A6 is dispensable for autosomal recessive Alport syndrome

Tomohiro Murata, Kan Katayama, Toshitaka Oohashi, Timo Jahnukainen, Tomoko Yonezawa, Yoshikazu Sado, Eiji Ishikawa, Shinsuke Nomura, Karl Tryggvason, Masaaki Ito

Sci Rep. 2016; 6: 29450. Published online 2016 Jul 5. doi: 10.1038/srep29450

PMCID:: PMC4932521

Abstract Article PDF–2.3M

Select item 49201635.

Thyroid follicle development requires Smad1/5- and endothelial cell-dependent basement membrane assembly

Mylah Villacorte, Anne-Sophie Delmarcelle, Manon Lernoux, Mahé Bouquet, Pascale Lemoine, Jennifer Bolsée, Lieve Umans, Susana Chuva de Sousa Lopes, Patrick Van Der Smissen, Takako Sasaki, Guido Bommer, Patrick Henriet, Samuel Refetoff, Frédéric P. Lemaigre, An Zwijsen, Pierre J. Courtoy, Christophe E. Pierreux

Development. 2016 Jun 1; 143(11): 1958–1970. doi: 10.1242/dev.134171

PMCID:: PMC4920163

Abstract Article

Select item 47493556.

Developmental distribution of collagen IV isoforms and relevance to ocular diseases

Xiaoyang Bai, David J. Dilworth, Yi-Chinn Weng, Douglas B. Gould

Matrix Biol. Author manuscript; available in PMC 2016 Feb 10.

Published in final edited form as: Matrix Biol. 2009 May; 28(4): 194–201. Published online 2009 Mar 9. doi: 10.1016/j.matbio.2009.02.004

PMCID:: PMC4749355

Abstract Article PDF–899K

Select item 42819357.

Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b is associated with strain-specific susceptibility to dietary nonalcoholic steatohepatitis in mice

Igor P. Pogribny, Athena Starlard-Davenport, Volodymyr P. Tryndyak, Tao Han, Sharon A. Ross, Ivan Rusyn, Frederick A. Beland

Lab Invest. Author manuscript; available in PMC 2015 Jan 2.

Published in final edited form as: Lab Invest. 2010 Oct; 90(10): 1437–1446. Published online 2010 Jun 14. doi: 10.1038/labinvest.2010.113

PMCID:: PMC4281935

Abstract Article PDF–547K

Select item 34447308.

D-2-hydroxyglutarate produced by mutant IDH1 perturbs collagen maturation and basement membrane function

Masato Sasaki, Christiane B. Knobbe, Momoe Itsumi, Andrew J. Elia, Isaac S. Harris, Iok In Christine Chio, Rob A. Cairns, Susan McCracken, Andrew Wakeham, Jillian Haight, Annick You Ten, Bryan Snow, Takeshi Ueda, Satoshi Inoue, Kazuo Yamamoto, Myunggon Ko, Anjana Rao, Katharine E. Yen, Shinsan M. Su, Tak Wah Mak

Genes Dev. 2012 Sep 15; 26(18): 2038–2049. doi: 10.1101/gad.198200.112

PMCID:: PMC3444730

Abstract Article PDF–1.6M

Select item 33225729.

The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices

Alexandra Naba, Karl R. Clauser, Sebastian Hoersch, Hui Liu, Steven A. Carr, Richard O. Hynes

Mol Cell Proteomics. 2012 Apr; 11(4): M111.014647. Published online 2011 Dec 9. doi: 10.1074/mcp.M111.014647

PMCID:: PMC3322572

Abstract Article PDF–7.3M

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253411.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 294793712.

Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation

Chinmay M. Trivedi, Wenting Zhu, Qiaohong Wang, Cheng Jia, Hae Jin Kee, Li Li, Sridhar Hannenhalli, Jonathan A. Epstein

Dev Cell. Author manuscript; available in PMC 2011 Sep 14.

Published in final edited form as: Dev Cell. 2010 Sep 14; 19(3): 450–459. doi: 10.1016/j.devcel.2010.08.012

PMCID:: PMC2947937

Abstract Article PDF–2.3M

Select item 279101613.

Abnormal Expression of Collagen IV in Lens Activates Unfolded Protein Response Resulting in Cataract

Zeynep Firtina, Brian P. Danysh, Xiaoyang Bai, Douglas B. Gould, Takehiro Kobayashi, Melinda K. Duncan

J Biol Chem. 2009 Dec 18; 284(51): 35872–35884. Published online 2009 Oct 26. doi: 10.1074/jbc.M109.060384

PMCID:: PMC2791016

Abstract Article PDF–7.2M

Select item 252903414.

Transcriptome-based systematic identification of extracellular matrix proteins

Ri-ichiroh Manabe, Ko Tsutsui, Tomiko Yamada, Mina Kimura, Itsuko Nakano, Chisei Shimono, Noriko Sanzen, Yutaka Furutani, Tomohiko Fukuda, Yasuko Oguri, Keiko Shimamoto, Daiji Kiyozumi, Yuya Sato, Yoshikazu Sado, Haruki Senoo, Shohei Yamashina, Shiro Fukuda, Jun Kawai, Nobuo Sugiura, Koji Kimata, Yoshihide Hayashizaki, Kiyotoshi Sekiguchi

Proc Natl Acad Sci U S A. 2008 Sep 2; 105(35): 12849–12854. Published online 2008 Aug 29. doi: 10.1073/pnas.0803640105

PMCID:: PMC2529034

Abstract Article PDF–1.1M

Select item 119036315.

Compound Genetic Ablation of Nidogen 1 and 2 Causes Basement Membrane Defects and Perinatal Lethality in Mice

Bernhard L. Bader, Neil Smyth, Sabine Nedbal, Nicolai Miosge, Anke Baranowsky, Sharada Mokkapati, Monzur Murshed, Roswitha Nischt

Mol Cell Biol. 2005 Aug; 25(15): 6846–6856. doi: 10.1128/MCB.25.15.6846-6856.2005

PMCID:: PMC1190363

Abstract Article PDF–2.0M

Select item 113500616.

Bifunctional promoter of type IV collagen COL4A5 and COL4A6 genes regulates the expression of α5 and α6 chains in a distinct cell-specific fashion

Malin Sund, Yohei Maeshima, Raghu Kalluri

Biochem J. 2005 May 1; 387(Pt 3): 755–761. Prepublished online 2004 Dec 15. Published online 2005 Apr 26. doi: 10.1042/BJ20041870

PMCID:: PMC1135006

Abstract Article PDF–191K

Select item 31689117.

Discoidin domain receptor 1 functions in axon extension of cerebellar granule neurons

Rupal S. Bhatt, Toshifumi Tomoda, Yin Fang, Mary E. Hatten

Genes Dev. 2000 Sep 1; 14(17): 2216–2228. doi: 10.1101/gad.821600

PMCID:: PMC316891

Abstract Article PDF–5.7M

Select item 31099218.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098019.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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