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Items: 1 to 20 of 46

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress
Andreas Hadjicharalambous, Alex J. Whale, Geylani Can, J. Mark Skehel, Jonathan M. Houseley, Philip Zegerman
Version 1. Wellcome Open Res. 2023; 8: 327. Published online 2023 Jul 26. doi: 10.12688/wellcomeopenres.19617.1
PMCID:
PMC10521137
AbstractArticlePDF–4.0M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae
Rani Yeung, Duncan J. Smith
Genetics. 2020 Apr; 214(4): 825–838. Published online 2020 Feb 18. doi: 10.1534/genetics.120.303092
PMCID:
PMC7153945
AbstractArticlePDF–1.8M
6.
Cdk1 gates cell cycle-dependent tRNA synthesis by regulating RNA polymerase III activity
Maria C Herrera, Pierre Chymkowitch, Joseph M Robertson, Jens Eriksson, Stig Ove Bøe, Ingrun Alseth, Jorrit M Enserink
Nucleic Acids Res. 2018 Dec 14; 46(22): 11698–11711. Published online 2018 Sep 22. doi: 10.1093/nar/gky846
Correction in:
Nucleic Acids Res. 2018 Dec 14; 46(22): 12188–12189.
PMCID:
PMC6294503
AbstractArticlePDF–3.0M
7.
Function of TFIIIC, RNA polymerase III initiation factor, in activation and repression of tRNA gene transcription
Małgorzata Cieśla, Ewa Skowronek, Magdalena Boguta
Nucleic Acids Res. 2018 Oct 12; 46(18): 9444–9455. Published online 2018 Jul 25. doi: 10.1093/nar/gky656
PMCID:
PMC6182151
AbstractArticlePDF–1.5M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity
Pierre Chymkowitch, Aurélie Nguéa P, Håvard Aanes, Joseph Robertson, Arne Klungland, Jorrit M. Enserink
Proc Natl Acad Sci U S A. 2017 Jan 31; 114(5): 1039–1044. Published online 2017 Jan 17. doi: 10.1073/pnas.1615093114
PMCID:
PMC5293095
AbstractArticlePDF–1.0M
10.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
11.
The poly(A)-binding protein Nab2 functions in RNA polymerase III transcription
L. Maximilian Reuter, Dominik M. Meinel, Katja Sträßer
Genes Dev. 2015 Jul 15; 29(14): 1565–1575. doi: 10.1101/gad.266205.115
PMCID:
PMC4526739
AbstractArticlePDF–373K
12.
A Region of Bdp1 Necessary for Transcription Initiation That Is Located within the RNA Polymerase III Active Site Cleft
Hui-Lan Hu, Chih-Chien Wu, Jin-Cheng Lee, Hung-Ta Chen
Mol Cell Biol. 2015 Aug; 35(16): 2831–2840. Prepublished online 2015 Jun 8. Published online 2015 Jul 20. doi: 10.1128/MCB.00263-15
PMCID:
PMC4508317
AbstractArticlePDF–2.1M
13.
Architecture of TFIIIC and its role in RNA polymerase III pre-initiation complex assembly
Gary Male, Alexander von Appen, Sebastian Glatt, Nicholas M. I. Taylor, Michele Cristovao, Helga Groetsch, Martin Beck, Christoph W. Müller
Nat Commun. 2015; 6: 7387. Published online 2015 Jun 10. doi: 10.1038/ncomms8387
PMCID:
PMC4490372
AbstractArticlePDF–2.2M
14.
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation
Lydia M. Castelli, David Talavera, Christopher J. Kershaw, Sarah S. Mohammad-Qureshi, Joseph L. Costello, William Rowe, Paul F. G. Sims, Christopher M. Grant, Simon J. Hubbard, Mark P. Ashe, Graham D. Pavitt
PLoS Genet. 2015 May; 11(5): e1005233. Published online 2015 May 14. doi: 10.1371/journal.pgen.1005233
PMCID:
PMC4431810
AbstractArticlePDF–5.5M
15.
Differential Phosphorylation of RNA Polymerase III and the Initiation Factor TFIIIB in Saccharomyces cerevisiae
Jaehoon Lee, Robyn D. Moir, Ian M. Willis
PLoS One. 2015; 10(5): e0127225. Published online 2015 May 13. doi: 10.1371/journal.pone.0127225
PMCID:
PMC4430316
AbstractArticlePDF–2.0M
16.
Exploring the Yeast Acetylome Using Functional Genomics
Supipi Kaluarachchi Duffy, Helena Friesen, Anastasia Baryshnikova, Jean-Philippe Lambert, Yolanda T. Chong, Daniel Figeys, Brenda Andrews
Cell. Author manuscript; available in PMC 2014 Aug 30.
Published in final edited form as: Cell. 2012 May 11; 149(4): 936–948. doi: 10.1016/j.cell.2012.02.064
PMCID:
PMC4149804
AbstractArticlePDF–2.1M
17.
Mapping the Protein Interaction Network for TFIIB-Related Factor Brf1 in the RNA Polymerase III Preinitiation Complex
Seok-Kooi Khoo, Chih-Chien Wu, Yu-Chun Lin, Jin-Cheng Lee, Hung-Ta Chen
Mol Cell Biol. 2014 Feb; 34(3): 551–559. doi: 10.1128/MCB.00910-13
PMCID:
PMC3911497
AbstractArticlePDF–1.7M
18.
Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing
Matthew Pratt-Hyatt, Dave A. Pai, Rebecca A. Haeusler, Glenn G. Wozniak, Paul D. Good, Erin L. Miller, Ian X. McLeod, John R. Yates, III, Anita K. Hopper, David R. Engelke
Proc Natl Acad Sci U S A. 2013 Aug 13; 110(33): E3081–E3089. Published online 2013 Jul 29. doi: 10.1073/pnas.1219946110
Correction in:
Proc Natl Acad Sci U S A. 2014 Feb 11; 111(6): 2397.
PMCID:
PMC3746885
AbstractArticlePDF–1.0M
19.
Genomic insights of protein arginine methyltransferase Hmt1 binding reveals novel regulatory functions
Eric J Milliman, Zihua Hu, Michael C Yu
BMC Genomics. 2012; 13: 728. Published online 2012 Dec 26. doi: 10.1186/1471-2164-13-728
PMCID:
PMC3568405
AbstractArticlePDF–683K
20.
Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses
Joshua M. Gilmore, Mihaela E. Sardiu, Swaminathan Venkatesh, Brent Stutzman, Allison Peak, Chris W. Seidel, Jerry L. Workman, Laurence Florens, Michael P. Washburn
Mol Cell Proteomics. 2012 Apr; 11(4): M111.011544. Published online 2011 Dec 22. doi: 10.1074/mcp.M111.011544
PMCID:
PMC3322567
AbstractArticlePDF–2.3M

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