PMC Links for GEO Profiles (Select 121631185) - PMC

Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 75777382.

Developmental, cellular, and behavioral phenotypes in a mouse model of congenital hypoplasia of the dentate gyrus

Amir Rattner, Chantelle E Terrillion, Claudia Jou, Tina Kleven, Shun Felix Hu, John Williams, Zhipeng Hou, Manisha Aggarwal, Susumu Mori, Gloria Shin, Loyal A Goff, Menno P Witter, Mikhail Pletnikov, André A Fenton, Jeremy Nathans

eLife. 2020; 9: e62766. Published online 2020 Oct 21. doi: 10.7554/eLife.62766

PMCID:: PMC7577738

Abstract Article PDF–5.6M

Select item 68033673.

HNF4 factors control chromatin accessibility and are redundantly required for maturation of the fetal intestine

Lei Chen, Natalie H. Toke, Shirley Luo, Roshan P. Vasoya, Rohit Aita, Aditya Parthasarathy, Yu-Hwai Tsai, Jason R. Spence, Michael P. Verzi

Development. 2019 Oct 1; 146(19): dev179432. Published online 2019 Aug 6. doi: 10.1242/dev.179432

PMCID:: PMC6803367

Abstract Article

Select item 59787554.

TFAM is required for maturation of the fetal and adult intestinal epithelium

Manasa Srivillibhuthur, Bailey N. Warder, Natalie H. Toke, Pooja P. Shah, Qiang Feng, Nan Gao, Edward M. Bonder, Michael P. Verzi

Dev Biol. Author manuscript; available in PMC 2019 Jul 15.

Published in final edited form as: Dev Biol. 2018 Jul 15; 439(2): 92–101. Published online 2018 Apr 22. doi: 10.1016/j.ydbio.2018.04.015

PMCID:: PMC5978755

Abstract Article PDF–2.6M

Select item 53376185.

Spatiotemporal Analysis of a Glycolytic Activity Gradient Linked to Mouse Embryo Mesoderm Development

Vinay Bulusu, Nicole Prior, Marteinn T. Snaebjornsson, Andreas Kuehne, Katharina F. Sonnen, Jana Kress, Frank Stein, Carsten Schultz, Uwe Sauer, Alexander Aulehla

Dev Cell. 2017 Feb 27; 40(4): 331–341.e4. doi: 10.1016/j.devcel.2017.01.015

PMCID:: PMC5337618

Abstract Article

Select item 52825536.

Transcriptional heterogeneity in the lactase gene within cell-type is linked to the epigenome

Edward Oh, Richie Jeremian, Gabriel Oh, Daniel Groot, Miki Susic, KwangHo Lee, Kelly Foy, Peter W. Laird, Arturas Petronis, Viviane Labrie

Sci Rep. 2017; 7: 41843. Published online 2017 Jan 31. doi: 10.1038/srep41843

PMCID:: PMC5282553

Abstract Article PDF–1.9M

Select item 48991717.

Lactase non-persistence is directed by DNA variation-dependent epigenetic aging

Viviane Labrie, Orion J Buske, Edward Oh, Richie Jeremian, Carolyn Ptak, Giedrius Gasiunas, Almantas Maleckas, Ruta Petereit, Aida Žvirbliene, Kestutis Adamonis, Edita Kriukiene, Karolis Koncevicius, Juozas Gordevicius, Akhil Nair, Aiping Zhang, Sasha Ebrahimi, Gabriel Oh, Virginijus Šikšnys, Limas Kupcinskas, Michael Brudno, Arturas Petronis

Nat Struct Mol Biol. Author manuscript; available in PMC 2016 Nov 9.

Published in final edited form as: Nat Struct Mol Biol. 2016 Jun; 23(6): 566–573. Published online 2016 May 9. doi: 10.1038/nsmb.3227

PMCID:: PMC4899171

Abstract Article PDF–644K

Select item 41494678.

GATA4 and GATA6 regulate intestinal epithelial cytodifferentiation during development

Emily M. Walker, Cayla A. Thompson, Michele A. Battle

Dev Biol. Author manuscript; available in PMC 2015 Aug 15.

Published in final edited form as: Dev Biol. 2014 Aug 15; 392(2): 283–294. Published online 2014 Jun 12. doi: 10.1016/j.ydbio.2014.05.017

PMCID:: PMC4149467

Abstract Article PDF–2.0M

Select item 36688379.

Endothelin-2 deficiency causes growth retardation, hypothermia, and emphysema in mice

Inik Chang, Alexa N. Bramall, Amy Greenstein Baynash, Amir Rattner, Dinesh Rakheja, Martin Post, Stephen Joza, Colin McKerlie, Duncan J. Stewart, Roderick R. McInnes, Masashi Yanagisawa

J Clin Invest. 2013 Jun 3; 123(6): 2643–2653. Published online 2013 May 8. doi: 10.1172/JCI66735

PMCID:: PMC3668837

Abstract Article PDF–2.1M

Select item 357241010.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 345511111.

E-cadherin is required for intestinal morphogenesis in the mouse

Benjamin J. Bondow, Mary L. Faber, Kevin J. Wojta, Emily Walker, Michele A. Battle

Dev Biol. Author manuscript; available in PMC 2013 Nov 1.

Published in final edited form as: Dev Biol. 2012 Nov 1; 371(1): 1–12. Published online 2012 Jul 2. doi: 10.1016/j.ydbio.2012.06.005

PMCID:: PMC3455111

Abstract Article PDF–2.3M

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 316706213.

Blimp1 regulates the transition of neonatal to adult intestinal epithelium

Vanesa Muncan, Jarom Heijmans, Stephen D. Krasinski, Nikè V. Büller, Manon E. Wildenberg, Sander Meisner, Marijana Radonjic, Kelly A. Stapleton, Wout H. Lamers, Izak Biemond, Marius A. van den Bergh Weerman, Dónal O'Carroll, James C. Hardwick, Daniel W. Hommes, Gijs R. van den Brink

Nat Commun. 2011 Aug 30; 2: 452. Published online 2011 Aug 30. doi: 10.1038/ncomms1463

PMCID:: PMC3167062

Abstract Article PDF–1.8M

Select item 302253414.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 294905415.

Pinin modulates expression of an intestinal homeobox gene, Cdx2, and plays an essential role for small intestinal morphogenesis

Jeong-Hoon Joo, Timothy J. Taxter, Gustavo C. Munguba, Yong H. Kim, Kanthi Dhaduvai, Nicholas W. Dunn, William J. Degan, S. Paul Oh, Stephen P. Sugrue

Dev Biol. Author manuscript; available in PMC 2011 Sep 15.

Published in final edited form as: Dev Biol. 2010 Sep 15; 345(2): 191–203. Published online 2010 Jul 14. doi: 10.1016/j.ydbio.2010.07.009

PMCID:: PMC2949054

Abstract Article PDF–3.4M

Select item 121925716.

Intestinal maturation in mice lacking CCAAT/enhancer-binding protein alpha (C/EPBalpha).

T J Oesterreicher, L L Leeper, M J Finegold, G J Darlington, S J Henning

Biochem J. 1998 Mar 15; 330(Pt 3): 1165–1171. doi: 10.1042/bj3301165

PMCID:: PMC1219257

Summary PDF–402K

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 30876319.

GenePaint.org: an atlas of gene expression patterns in the mouse embryo

Axel Visel, Christina Thaller, Gregor Eichele

Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029

PMCID:: PMC308763

Abstract Article PDF–253K

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