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Items: 1 to 20 of 683

1.
Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex
Matthias Merker, Thomas A. Kohl, Ivan Barilar, Sönke Andres, Philip W. Fowler, Erja Chryssanthou, Kristian Ängeby, Pontus Jureen, Danesh Moradigaravand, Julian Parkhill, Sharon J. Peacock, Thomas Schön, Florian P. Maurer, Timothy Walker, Claudio Köser, Stefan Niemann
Genome Med. 2020; 12: 27. Published online 2020 Mar 6. doi: 10.1186/s13073-020-00726-5
PMCID:
PMC7060619
AbstractArticlePDF–1.4M
2.
Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension
Boatema Ofori-Anyinam, Abi Janet Riley, Tijan Jobarteh, Ensa Gitteh, Binta Sarr, Tutty Isatou Faal-Jawara, Leen Rigouts, Madikay Senghore, Aderemi Kehinde, Nneka Onyejepu, Martin Antonio, Bouke C. de Jong, Florian Gehre, Conor J. Meehan
Tuberculosis (Edinb) 2020 Jan; 120: 101899. doi: 10.1016/j.tube.2020.101899
PMCID:
PMC7049902
AbstractArticle
3.
Multidrug- and Extensively Drug-Resistant Mycobacterium tuberculosis Beijing Clades, Ukraine, 2015
Matthias Merker, Elena Nikolaevskaya, Thomas A. Kohl, Barbara Molina-Moya, Olha Pavlovska, Patrik Brännberg, Andrii Dudnyk, Valentyna Stokich, Ivan Barilar, Iryna Marynova, Tetiana Filipova, Cristina Prat, Anders Sjöstedt, Jose Dominguez, Olena Rzhepishevska, Stefan Niemann
Emerg Infect Dis. 2020 Mar; 26(3): 481–490. doi: 10.3201/eid2603.190525
PMCID:
PMC7045844
AbstractArticlePDF–2.5M
4.
Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania
Bugwesa Z. Katale, Peter M. Mbelele, Nsiande A. Lema, Susana Campino, Stephen E. Mshana, Mark M. Rweyemamu, Jody E. Phelan, Julius D. Keyyu, Mtebe Majigo, Erasto V. Mbugi, Hazel M. Dockrell, Taane G. Clark, Mecky I. Matee, Stellah Mpagama
BMC Genomics. 2020; 21: 174. Published online 2020 Feb 21. doi: 10.1186/s12864-020-6577-1
PMCID:
PMC7035673
AbstractArticlePDF–1.0M
5.
Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis
Manisha Aswal, Anjali Garg, Neelja Singhal, Manish Kumar
Sci Rep. 2020; 10: 3036. Published online 2020 Feb 20. doi: 10.1038/s41598-020-59924-1
PMCID:
PMC7033130
AbstractArticlePDF–2.3M
6.
Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering
Brendon M. Lee, Liam K. Harold, Deepak V. Almeida, Livnat Afriat-Jurnou, Htin Lin Aung, Brian M. Forde, Kiel Hards, Sacha J. Pidot, F. Hafna Ahmed, A. Elaaf Mohamed, Matthew C. Taylor, Nicholas P. West, Timothy P. Stinear, Chris Greening, Scott A. Beatson, Eric L. Nuermberger, Gregory M. Cook, Colin J. Jackson
PLoS Pathog. 2020 Feb; 16(2): e1008287. Published online 2020 Feb 7. doi: 10.1371/journal.ppat.1008287
PMCID:
PMC7032734
AbstractArticlePDF–3.3M
7.
Genome-wide identification of the context-dependent sRNA expression in Mycobacterium tuberculosis
Vimla Kany G. Ami, Rami Balasubramanian, Shubhada R. Hegde
BMC Genomics. 2020; 21: 167. Published online 2020 Feb 18. doi: 10.1186/s12864-020-6573-5
PMCID:
PMC7029489
AbstractArticlePDF–3.3M
8.
New insights into the mycobacterial PE and PPE proteins provide a framework for future research
Louis S. Ates
Mol Microbiol. 2020 Jan; 113(1): 4–21. Published online 2019 Nov 24. doi: 10.1111/mmi.14409
PMCID:
PMC7028111
AbstractArticlePDF–1.3M
9.
A Universal, Genomewide GuideFinder for CRISPR/Cas9 Targeting in Microbial Genomes
Michelle Spoto, Changhui Guan, Elizabeth Fleming, Julia Oh
mSphere. 2020 Jan-Feb; 5(1): e00086-20. Published online 2020 Feb 12. doi: 10.1128/mSphere.00086-20
PMCID:
PMC7021469
AbstractArticlePDF–2.1M
10.
Previously undetected super-spreading of Mycobacterium tuberculosis revealed by deep sequencing
Robyn S Lee, Jean-François Proulx, Fiona McIntosh, Marcel A Behr, William P Hanage
eLife. 2020; 9: e53245. Published online 2020 Feb 4. doi: 10.7554/eLife.53245
PMCID:
PMC7012596
AbstractArticlePDF–863K
11.
SEVERITY OF TB CLASSIFIED BY MODIFIED BANDIM TB SCORING ASSOCIATES WITH THE SPECIFIC SEQUENCE OF ESXA GENES IN MDR-TB PATIENTS
Desak Nyoman Surya Suameitria Dewi, Ni Made Mertaniasih, Soedarsono
Afr J Infect Dis. 2020; 14(1): 8–15. Published online 2020 Jan 8. doi: 10.21010/ajid.v14i1.2
PMCID:
PMC7011159
AbstractArticlePDF–213K
12.
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
Martin Hunt, Phelim Bradley, Simon Grandjean Lapierre, Simon Heys, Mark Thomsit, Michael B. Hall, Kerri M. Malone, Penelope Wintringer, Timothy M. Walker, Daniela M. Cirillo, Iñaki Comas, Maha R. Farhat, Phillip Fowler, Jennifer Gardy, Nazir Ismail, Thomas A. Kohl, Vanessa Mathys, Matthias Merker, Stefan Niemann, Shaheed Vally Omar, Vitali Sintchenko, Grace Smith, Dick van Soolingen, Philip Supply, Sabira Tahseen, Mark Wilcox, Irena Arandjelovic, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal
Version 1. Wellcome Open Res. 2019; 4: 191. Published online 2019 Dec 2. doi: 10.12688/wellcomeopenres.15603.1
PMCID:
PMC7004237
AbstractArticlePDF–1.4M
13.
Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern Brazil
Marília Lima da Conceição, Emilyn Costa Conceição, Ismari Perini Furlaneto, Sandro Patroca da Silva, Arthur Emil dos Santos Guimarães, Pedro Gomes, María Laura Boschiroli, Lorraine Michelet, Thomas Andreas Kohl, Katharina Kranzer, Loreno da Costa Francez, Luana Nepomuceno Gondim Costa Lima, Isabel Portugal, João Perdigão, Karla Valéria Batista Lima
Sci Rep. 2020; 10: 1747. Published online 2020 Feb 4. doi: 10.1038/s41598-020-58398-5
PMCID:
PMC7000724
AbstractArticlePDF–3.4M
14.
New 2-Ethylthio-4-methylaminoquinazoline derivatives inhibiting two subunits of cytochrome bc1 in Mycobacterium tuberculosis
Andréanne Lupien, Caroline Shi-Yan Foo, Svetlana Savina, Anthony Vocat, Jérémie Piton, Natalia Monakhova, Andrej Benjak, Dirk A. Lamprecht, Adrie J. C. Steyn, Kevin Pethe, Vadim A. Makarov, Stewart T. Cole
PLoS Pathog. 2020 Jan; 16(1): e1008270. Published online 2020 Jan 23. doi: 10.1371/journal.ppat.1008270
PMCID:
PMC6999911
AbstractArticlePDF–2.2M
15.
Detection of Novel Gene Mutations Associated with Pyrazinamide Resistance in Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolates in Southern China
HM Adnan Hameed, Yaoju Tan, Md Mahmudul Islam, Zhili Lu, Chiranjibi Chhotaray, Shuai Wang, Zhiyong Liu, Cuiting Fang, Shouyong Tan, Wing Wai Yew, Nanshan Zhong, Jianxiong Liu, Tianyu Zhang
Infect Drug Resist. 2020; 13: 217–227. Published online 2020 Jan 22. doi: 10.2147/IDR.S230774
PMCID:
PMC6986415
AbstractArticlePDF–613K
16.
QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data
Christine Anyansi, Arlin Keo, Bruce J. Walker, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel
BMC Genomics. 2020; 21: 80. Published online 2020 Jan 28. doi: 10.1186/s12864-020-6486-3
PMCID:
PMC6986090
AbstractArticlePDF–1.4M
17.
Key Transitions in the Evolution of Rapid and Slow Growing Mycobacteria Identified by Comparative Genomics
Nathan L. Bachmann, Rauf Salamzade, Abigail L. Manson, Richard Whittington, Vitali Sintchenko, Ashlee M. Earl, Ben J. Marais
Front Microbiol. 2019; 10: 3019. Published online 2020 Jan 21. doi: 10.3389/fmicb.2019.03019
PMCID:
PMC6985099
AbstractArticlePDF–7.3M
18.
Draft Genome Sequence of an Isolate of Extensively Drug-Resistant Mycobacterium tuberculosis from Nepal
Sanjay S. Gautam, Kelvin W. C. Leong, Manoj Pradhan, Y. Ibotomba Singh, Sagar K. Rajbhandari, Gokarna R. Ghimire, Krishna Adhikari, Uma Shrestha, Raina Chaudhary, Gyanendra Ghimire, Sundar Khadka, Ronan F. O’Toole
Microbiol Resour Announc. 2020 Jan; 9(4): e01404-19. Published online 2020 Jan 23. doi: 10.1128/MRA.01404-19
PMCID:
PMC6979304
AbstractArticlePDF–123K
19.
Epidemiological cut-offs for Sensititre susceptibility testing of Mycobacterium tuberculosis: interpretive criteria cross validated with whole genome sequencing
Nazir A. Ismail, Farzana Ismail, Lavania Joseph, Netricia Govender, Linsay Blows, Koné Kaniga, Shaheed V. Omar
Sci Rep. 2020; 10: 1013. Published online 2020 Jan 23. doi: 10.1038/s41598-020-57992-x
PMCID:
PMC6978314
AbstractArticlePDF–2.2M
20.
Genomic Insights Into the Mycobacterium kansasii Complex: An Update
Tomasz Jagielski, Paulina Borówka, Zofia Bakuła, Jakub Lach, Błażej Marciniak, Anna Brzostek, Jarosław Dziadek, Mikołaj Dziurzyński, Lian Pennings, Jakko van Ingen, Manca Žolnir-Dovč, Dominik Strapagiel
Front Microbiol. 2019; 10: 2918. Published online 2020 Jan 15. doi: 10.3389/fmicb.2019.02918
PMCID:
PMC6974680
AbstractArticlePDF–10M

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