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Select item 70700401.

A megaplasmid family driving dissemination of multidrug resistance in Pseudomonas

Adrian Cazares, Matthew P. Moore, James P. J. Hall, Laura L. Wright, Macauley Grimes, Jean-Guillaume Emond-Rhéault, Pisut Pongchaikul, Pitak Santanirand, Roger C. Levesque, Joanne L. Fothergill, Craig Winstanley

Nat Commun. 2020; 11: 1370. Published online 2020 Mar 13. doi: 10.1038/s41467-020-15081-7

PMCID:: PMC7070040

Abstract Article PDF–1.9M

Select item 70575082.

Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology

Mi Nguyen-Tra Le, Shizuo Kayama, Mineka Yoshikawa, Toshinori Hara, Seiya Kashiyama, Junzo Hisatsune, Keiko Tsuruda, Makoto Onodera, Hiroki Ohge, Kazuhiro Tsuga, Motoyuki Sugai

Antimicrob Resist Infect Control. 2020; 9: 45. Published online 2020 Mar 4. doi: 10.1186/s13756-020-0705-1

PMCID:: PMC7057508

Abstract Article PDF–1.2M

Select item 70557973.

The SNAP hypothesis: Chromosomal rearrangements could emerge from positive Selection during Niche Adaptation

Gerrit Brandis, Diarmaid Hughes

PLoS Genet. 2020 Mar; 16(3): e1008615. Published online 2020 Mar 4. doi: 10.1371/journal.pgen.1008615

PMCID:: PMC7055797

Abstract Article PDF–1.5M

Select item 70442734.

Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide

José Manuel Rubio-Gómez, Carlos Molina Santiago, Zulema Udaondo, Mireia Tena Garitaonaindia, Tino Krell, Juan-Luis Ramos, Abdelali Daddaoua

Front Microbiol. 2020; 11: 202. Published online 2020 Feb 20. doi: 10.3389/fmicb.2020.00202

PMCID:: PMC7044273

Abstract Article PDF–2.9M

Select item 70373515.

Integrated Genome-Wide Analysis of an Isogenic Pair of Pseudomonas aeruginosa Clinical Isolates with Differential Antimicrobial Resistance to Ceftolozane/Tazobactam, Ceftazidime/Avibactam, and Piperacillin/Tazobactam

Weihua Huang, Joelle El Hamouche, Guiqing Wang, Melissa Smith, Changhong Yin, Abhay Dhand, Nevenka Dimitrova, John T. Fallon

Int J Mol Sci. 2020 Feb; 21(3): 1026. Published online 2020 Feb 4. doi: 10.3390/ijms21031026

PMCID:: PMC7037351

Abstract Article PDF–2.0M

Select item 70353776.

The extracytoplasmic function sigma factor σ^VreI is active during infection and contributes to phosphate starvation-induced virulence of Pseudomonas aeruginosa

Joaquín R. Otero-Asman, José M. Quesada, Kin K. Jim, Alain Ocampo-Sosa, Cristina Civantos, Wilbert Bitter, María A. Llamas

Sci Rep. 2020; 10: 3139. Published online 2020 Feb 21. doi: 10.1038/s41598-020-60197-x

PMCID:: PMC7035377

Abstract Article PDF–1.7M

Select item 70237227.

Transcriptomic Response in Pseudomonas aeruginosa towards Treatment with a Kaempferol Isolated from Melastoma malabathricum Linn Leaves

Mourouge Saadi Alwash, Wan Syaidatul Aqma, Wan Yaacob Ahmad, Nazlina Ibrahim

Int J Microbiol. 2020; 2020: 6915483. Published online 2020 Feb 5. doi: 10.1155/2020/6915483

PMCID:: PMC7023722

Abstract Article PDF–503K

Select item 70214698.

A Universal, Genomewide GuideFinder for CRISPR/Cas9 Targeting in Microbial Genomes

Michelle Spoto, Changhui Guan, Elizabeth Fleming, Julia Oh

mSphere. 2020 Jan-Feb; 5(1): e00086-20. Published online 2020 Feb 12. doi: 10.1128/mSphere.00086-20

PMCID:: PMC7021469

Abstract Article PDF–2.1M

Select item 69975949.

Novel Bacterial Diversity and Fragmented eDNA Identified in Hyperbiofilm-Forming Pseudomonas aeruginosa Rugose Small Colony Variant

Binbin Deng, Subhadip Ghatak, Subendu Sarkar, Kanhaiya Singh, Piya Das Ghatak, Shomita S. Mathew-Steiner, Sashwati Roy, Savita Khanna, Daniel J. Wozniak, David W. McComb, Chandan K. Sen

iScience. 2020 Feb 21; 23(2): 100827. Published online 2020 Jan 9. doi: 10.1016/j.isci.2020.100827

PMCID:: PMC6997594

Abstract Article PDF–5.6M

Select item 699352410.

Simulating metagenomic stable isotope probing datasets with MetaSIPSim

Samuel E. Barnett, Daniel H. Buckley

BMC Bioinformatics. 2020; 21: 37. Published online 2020 Jan 30. doi: 10.1186/s12859-020-3372-6

PMCID:: PMC6993524

Abstract Article PDF–1.7M

Select item 697456711.

RNA G-Quadruplex Structures Mediate Gene Regulation in Bacteria

Xiaolong Shao, Weitong Zhang, Mubarak Ishaq Umar, Hei Yuen Wong, Zijing Seng, Yingpeng Xie, Yingchao Zhang, Liang Yang, Chun Kit Kwok, Xin Deng

mBio. 2020 Jan-Feb; 11(1): e02926-19. Published online 2020 Jan 21. doi: 10.1128/mBio.02926-19

PMCID:: PMC6974567

Abstract Article PDF–2.0M

Select item 696028912.

Quantitative Framework for Model Evaluation in Microbiology Research Using Pseudomonas aeruginosa and Cystic Fibrosis Infection as a Test Case

Daniel M. Cornforth, Frances L. Diggle, Jeffrey A. Melvin, Jennifer M. Bomberger, Marvin Whiteley

mBio. 2020 Jan-Feb; 11(1): e03042-19. Published online 2020 Jan 14. doi: 10.1128/mBio.03042-19

PMCID:: PMC6960289

Abstract Article PDF–1.5M

Select item 694570013.

Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

Adam Kawalek, Karolina Kotecka, Magdalena Modrzejewska, Jan Gawor, Grazyna Jagura-Burdzy, Aneta Agnieszka Bartosik

BMC Genomics. 2020; 21: 14. Published online 2020 Jan 6. doi: 10.1186/s12864-019-6378-6

PMCID:: PMC6945700

Abstract Article PDF–2.4M

Select item 692252714.

Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate

Meagan E. Valentine, Brandon D. Kirby, Thomas R. Withers, Shannon L. Johnson, Timothy E. Long, Youai Hao, Joseph S. Lam, Richard M. Niles, Hongwei D. Yu

Microb Biotechnol. 2020 Jan; 13(1): 162–175. Published online 2019 Apr 21. doi: 10.1111/1751-7915.13411

PMCID:: PMC6922527

Abstract Article PDF–5.0M

Select item 691776015.

Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis

Viktoria Betin, Cristina Penaranda, Nirmalya Bandyopadhyay, Rui Yang, Angela Abitua, Roby P. Bhattacharyya, Amy Fan, Roi Avraham, Jonathan Livny, Noam Shoresh, Deborah T. Hung

Sci Rep. 2019; 9: 19244. Published online 2019 Dec 17. doi: 10.1038/s41598-019-55633-6

PMCID:: PMC6917760

Abstract Article PDF–2.0M

Select item 690669516.

Draft genomes and initial characteriaztion of siderophore producing pseudomonads isolated from mine dump and mine drainage

Marika Hofmann, Thomas Heine, Vivian Schulz, Sarah Hofmann, Dirk Tischler

Biotechnol Rep (Amst) 2020 Mar; 25: e00403. Published online 2019 Nov 23. doi: 10.1016/j.btre.2019.e00403

PMCID:: PMC6906695

Abstract Article PDF–1.1M

Select item 689093117.

Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing

Kotaro Chihara, Thorsten Bischler, Lars Barquist, Vivian A. Monzon, Naohiro Noda, Jörg Vogel, Satoshi Tsuneda

mSystems. 2019 Nov-Dec; 4(6): e00590-19. Published online 2019 Dec 3. doi: 10.1128/mSystems.00590-19

PMCID:: PMC6890931

Abstract Article PDF–2.0M

Select item 688946418.

Behavioral heterogeneity in quorum sensing can stabilize social cooperation in microbial populations

Kelei Zhao, Linjie Liu, Xiaojie Chen, Ting Huang, Lianming Du, Jiafu Lin, Yang Yuan, Yingshun Zhou, Bisong Yue, Kun Wei, Yiwen Chu

BMC Biol. 2019; 17: 20. Published online 2019 Mar 6. doi: 10.1186/s12915-019-0639-3

PMCID:: PMC6889464

Abstract Article PDF–1.8M

Select item 685128219.

High-Risk International Clones of Carbapenem-Nonsusceptible Pseudomonas aeruginosa Endemic to Indonesian Intensive Care Units: Impact of a Multifaceted Infection Control Intervention Analyzed at the Genomic Level

Andreu Coello Pelegrin, Yulia Rosa Saharman, Aurélien Griffon, Mattia Palmieri, Caroline Mirande, Anis Karuniawati, Rudyanto Sedono, Dita Aditianingsih, Wil H. F. Goessens, Alex van Belkum, Henri A. Verbrugh, Corné H. W. Klaassen, Juliëtte A. Severin

mBio. 2019 Nov-Dec; 10(6): e02384-19. Published online 2019 Nov 12. doi: 10.1128/mBio.02384-19

Correction in:: mBio. 2020 May-Jun; 11(3): e01372-20.

PMCID:: PMC6851282

Abstract Article PDF–2.3M

Select item 684165520.

CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction

Amani Al-Ajlan, Achraf El Allali

Interdiscip Sci. 2019; 11(4): 628–635. Published online 2018 Dec 27. doi: 10.1007/s12539-018-0313-4

PMCID:: PMC6841655

Abstract Article PDF–1.1M

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