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Items: 1 to 20 of 177

1.
The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in Arabidopsis thaliana
Zhiqiang Wu, Gus Waneka, Daniel B. Sloan
G3 (Bethesda) 2020 Mar; 10(3): 1077–1086. Published online 2020 Jan 21. doi: 10.1534/g3.119.401023
PMCID:
PMC7056966
AbstractArticlePDF–1.5M
2.
The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation
Yating Zhang, Dong An, Changsheng Li, Zhixuan Zhao, Wenqin Wang
BMC Genomics. 2020; 21: 76. Published online 2020 Jan 28. doi: 10.1186/s12864-020-6499-y
PMCID:
PMC6986005
AbstractArticlePDF–1.9M
3.
Comparative analysis of cp genome of Fagonia indica growing in desert and its implications in pattern of similarity and variations
Mohamed Soliman Elshikh, Soo-Yong Kim, Mohammad Ajmal Ali, Fahad Al-Hemaid, Shen-Ming Chen, Sangho Choi, Mohammad Oliur Rahman, Meena Elangbam, Joongku Lee
Saudi J Biol Sci. 2020 Jan; 27(1): 229–232. Published online 2019 Aug 31. doi: 10.1016/j.sjbs.2019.08.016
PMCID:
PMC6933238
AbstractArticlePDF–1.6M
4.
Comparison of different annotation tools for characterization of the complete chloroplast genome of Corylus avellana cv Tombul
Kadriye Kahraman, Stuart James Lucas
BMC Genomics. 2019; 20: 874. Published online 2019 Nov 20. doi: 10.1186/s12864-019-6253-5
PMCID:
PMC6865063
AbstractArticlePDF–1.6M
5.
Unique Shine–Dalgarno Sequences in Cyanobacteria and Chloroplasts Reveal Evolutionary Differences in Their Translation Initiation
Yulong Wei, Xuhua Xia
Genome Biol Evol. 2019 Nov; 11(11): 3194–3206. Published online 2019 Oct 22. doi: 10.1093/gbe/evz227
PMCID:
PMC6847405
AbstractArticlePDF–1.0M
6.
A New Chloroplast DNA Extraction Protocol Significantly Improves the Chloroplast Genome Sequence Quality of Foxtail Millet (Setaria italica (L.) P. Beauv.)
Dan Liu, Yanjiao Cui, Suying Li, Guihua Bai, Qiang Li, Zilong Zhao, Dan Liang, Conglei Wang, Jianhe Wang, Xiaowei Shi, Chao Chen, Gang Feng, Zhengli Liu
Sci Rep. 2019; 9: 16227. Published online 2019 Nov 7. doi: 10.1038/s41598-019-52786-2
PMCID:
PMC6838068
AbstractArticlePDF–3.4M
7.
PCIR: a database of Plant Chloroplast Inverted Repeats
Rui Zhang, Fangfang Ge, Huayang Li, Yudong Chen, Ying Zhao, Ying Gao, Zhiguo Liu, Long Yang
Database (Oxford) 2019; 2019: baz127. Published online 2019 Nov 7. doi: 10.1093/database/baz127
PMCID:
PMC6835207
AbstractArticlePDF–97M
8.
Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis
James J. McDermott, Kenneth P. Watkins, Rosalind Williams-Carrier, Alice Barkan
Plant Cell. 2019 Aug; 31(8): 1723–1733. Published online 2019 May 23. doi: 10.1105/tpc.19.00177
PMCID:
PMC6713294
AbstractArticlePDF–2.0M
9.
Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii
Yingnan Chen, Nan Hu, Huaitong Wu
Biomed Res Int. 2019; 2019: 5190425. Published online 2019 Jul 15. doi: 10.1155/2019/5190425
PMCID:
PMC6662467
AbstractArticlePDF–1.4M
10.
Extensive chloroplast genome rearrangement amongst three closely related Halamphora spp. (Bacillariophyceae), and evidence for rapid evolution as compared to land plants
Sarah E. Hamsher, Kyle G. Keepers, Cloe S. Pogoda, Joshua G. Stepanek, Nolan C. Kane, J. Patrick Kociolek
PLoS One. 2019; 14(7): e0217824. Published online 2019 Jul 3. doi: 10.1371/journal.pone.0217824
PMCID:
PMC6608930
AbstractArticlePDF–2.0M
11.
CPGAVAS2, an integrated plastome sequence annotator and analyzer
Linchun Shi, Haimei Chen, Mei Jiang, Liqiang Wang, Xi Wu, Linfang Huang, Chang Liu
Nucleic Acids Res. 2019 Jul 2; 47(W1): W65–W73. Published online 2019 May 8. doi: 10.1093/nar/gkz345
PMCID:
PMC6602467
AbstractArticlePDF–3.4M
12.
Aethionema arabicum: a novel model plant to study the light control of seed germination
Zsuzsanna Mérai, Kai Graeber, Per Wilhelmsson, Kristian K Ullrich, Waheed Arshad, Christopher Grosche, Danuše Tarkowská, Veronika Turečková, Miroslav Strnad, Stefan A Rensing, Gerhard Leubner-Metzger, Ortrun Mittelsten Scheid
J Exp Bot. 2019 Jun 1; 70(12): 3313–3328. Published online 2019 Apr 5. doi: 10.1093/jxb/erz146
PMCID:
PMC6598081
AbstractArticlePDF–1.3M
13.
De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis
Hideki Hirakawa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Soichiro Nagano, Kenta Shirasawa, Yohei Higuchi, Makoto Kusaba, Masaji Koshioka, Yoshihiro Nakano, Masafumi Yagi, Hiroyasu Yamaguchi, Kenji Taniguchi, Michiharu Nakano, Sachiko N Isobe
DNA Res. 2019 Jun; 26(3): 195–203. Published online 2019 Jan 27. doi: 10.1093/dnares/dsy048
PMCID:
PMC6589549
AbstractArticlePDF–1.6M
14.
A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set
Boas Pucker, Daniela Holtgräwe, Kai Bernd Stadermann, Katharina Frey, Bruno Huettel, Richard Reinhardt, Bernd Weisshaar
PLoS One. 2019; 14(5): e0216233. Published online 2019 May 21. doi: 10.1371/journal.pone.0216233
PMCID:
PMC6529160
AbstractArticlePDF–1.1M
15.
Tracing the Evolution of the Plastome and Mitogenome in the Chloropicophyceae Uncovered Convergent tRNA Gene Losses and a Variant Plastid Genetic Code
Monique Turmel, Adriana Lopes dos Santos, Christian Otis, Roxanne Sergerie, Claude Lemieux
Genome Biol Evol. 2019 Apr; 11(4): 1275–1292. Published online 2019 Apr 1. doi: 10.1093/gbe/evz074
PMCID:
PMC6486808
AbstractArticlePDF–2.9M
16.
PPR Protein BFA2 Is Essential for the Accumulation of the atpH/F Transcript in Chloroplasts
Lin Zhang, Wen Zhou, Liping Che, Jean-David Rochaix, Congming Lu, Wenjing Li, Lianwei Peng
Front Plant Sci. 2019; 10: 446. Published online 2019 Apr 12. doi: 10.3389/fpls.2019.00446
PMCID:
PMC6474325
AbstractArticlePDF–6.4M
17.
Transcription is a major driving force for plastid genome instability in Arabidopsis
Juliana Andrea Pérez Di Giorgio, Étienne Lepage, Samuel Tremblay-Belzile, Sébastien Truche, Audrey Loubert-Hudon, Normand Brisson
PLoS One. 2019; 14(4): e0214552. Published online 2019 Apr 3. doi: 10.1371/journal.pone.0214552
PMCID:
PMC6447228
AbstractArticlePDF–2.8M
18.
High-efficiency generation of fertile transplastomic Arabidopsis plants
Stephanie Ruf, Joachim Forner, Claudia Hasse, Xenia Kroop, Stefanie Seeger, Laura Schollbach, Anne Schadach, Ralph Bock
Nat Plants. Author manuscript; available in PMC 2019 Aug 18.
Published in final edited form as: Nat Plants. 2019 Mar; 5(3): 282–289. Published online 2019 Feb 18. doi: 10.1038/s41477-019-0359-2
PMCID:
PMC6420123
AbstractArticlePDF–1.5M
19.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
AbstractArticlePDF–1.4M
20.
A comparative evaluation of hybrid error correction methods for error-prone long reads
Shuhua Fu, Anqi Wang, Kin Fai Au
Genome Biol. 2019; 20: 26. Published online 2019 Feb 4. doi: 10.1186/s13059-018-1605-z
PMCID:
PMC6362602
AbstractArticlePDF–2.3M

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