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Select item 70400631.

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K. Qureshi, Axel Fischer, Sebastian Proost, M. Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov, Salma Balazadeh, Dirk Walther, Alisdair R. Fernie, Bernd Mueller-Roeber, Jacques Hille, Tsanko S. Gechev

Cell Mol Life Sci. 2020 Feb; 77(4): 705–718. Published online 2019 Jun 27. doi: 10.1007/s00018-019-03202-5

PMCID:: PMC7040063

Abstract Article PDF–1.6M

Select item 68942212.

A T-DNA mutant screen that combines high-throughput phenotyping with the efficient identification of mutated genes by targeted genome sequencing

Ulrike Frank, Susanne Kublik, Dörte Mayer, Marion Engel, Michael Schloter, Jörg Durner, Frank Gaupels

BMC Plant Biol. 2019; 19: 539. Published online 2019 Dec 4. doi: 10.1186/s12870-019-2162-7

PMCID:: PMC6894221

Abstract Article PDF–2.1M

Select item 68218023.

Detection and identification of transgenic events by next generation sequencing combined with enrichment technologies

Frédéric Debode, Julie Hulin, Benoît Charloteaux, Wouter Coppieters, Marc Hanikenne, Latifa Karim, Gilbert Berben

Sci Rep. 2019; 9: 15595. Published online 2019 Oct 30. doi: 10.1038/s41598-019-51668-x

PMCID:: PMC6821802

Abstract Article PDF–1.3M

Select item 68049234.

Targeted deletion of floral development genes in Arabidopsis with CRISPR/Cas9 using the RNA endoribonuclease Csy4 processing system

Yingzhu Liu, Yike Gao, Yaohui Gao, Qixiang Zhang

Hortic Res. 2019; 6: 99. Published online 2019 Aug 21. doi: 10.1038/s41438-019-0179-6

PMCID:: PMC6804923

Abstract Article PDF–2.7M

Select item 64169245.

GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes

Brian B. Merritt, Lily S. Cheung

BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x

PMCID:: PMC6416924

Abstract Article PDF–1.4M

Select item 62204466.

Assessing the impact of exact reads on reducing the error rate of read mapping

Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh

BMC Bioinformatics. 2018; 19: 406. Published online 2018 Nov 6. doi: 10.1186/s12859-018-2432-7

PMCID:: PMC6220446

Abstract Article PDF–1.9M

Select item 62156127.

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Shir Portugez, William F. Martin, Einat Hazkani-Covo

BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x

PMCID:: PMC6215612

Abstract Article PDF–900K

Select item 61300248.

PROTEIN PHOSHATASE 2A B’α and β Maintain Centromeric Sister Chromatid Cohesion during Meiosis in Arabidopsis

Guoliang Yuan, Behzad Heidari Ahootapeh, Shinichiro Komaki, Arp Schnittger, Cathrine Lillo, Nico De Storme, Danny Geelen

Plant Physiol. 2018 Sep; 178(1): 317–328. Published online 2018 Jul 30. doi: 10.1104/pp.18.00281

PMCID:: PMC6130024

Abstract Article PDF–1.6M

Select item 59744819.

eCD4-Ig Variants That More Potently Neutralize HIV-1

Ina Fetzer, Matthew R. Gardner, Meredith E. Davis-Gardner, Neha R. Prasad, Barnett Alfant, Jesse A. Weber, Michael Farzan

J Virol. 2018 Jun 15; 92(12): e02011-17. Prepublished online 2018 Mar 28. Published online 2018 May 29. doi: 10.1128/JVI.02011-17

PMCID:: PMC5974481

Abstract Article PDF–2.5M

Select item 587225510.

Succinct colored de Bruijn graphs

Martin D. Muggli, Alexander Bowe, Noelle R. Noyes, Paul S. Morley, Keith E. Belk, Robert Raymond, Travis Gagie, Simon J. Puglisi, Christina Boucher

Bioinformatics. 2017 Oct 15; 33(20): 3181–3187. Published online 2017 Feb 14. doi: 10.1093/bioinformatics/btx067

PMCID:: PMC5872255

Abstract Article PDF–224K

Select item 563266411.

Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories

Yang Liu, Yousry A. El-Kassaby

Front Plant Sci. 2017; 8: 1719. Published online 2017 Oct 4. doi: 10.3389/fpls.2017.01719

PMCID:: PMC5632664

Abstract Article PDF–6.5M

Select item 560763312.

Young inversion with multiple linked QTLs under selection in a hybrid zone

Cheng-Ruei Lee, Baosheng Wang, Julius Mojica, Terezie Mandáková, Kasavajhala V. S. K. Prasad, Jose Luis Goicoechea, Nadeesha Perera, Uffe Hellsten, Hope N. Hundley, Jenifer Johnson, Jane Grimwood, Kerrie Barry, Stephen Fairclough, Jerry W. Jenkins, Yeisoo Yu, Dave Kudrna, Jianwei Zhang, Jayson Talag, Wolfgang Golser, Katherine Ghattas, M. Eric Schranz, Rod Wing, Martin A. Lysak, Jeremy Schmutz, Daniel S. Rokhsar, Thomas Mitchell-Olds

Nat Ecol Evol. Author manuscript; available in PMC 2018 Apr 3.

Published in final edited form as: Nat Ecol Evol. 2017 Apr 3; 1(5): 119. Published online 2017 Apr 3. doi: 10.1038/s41559-017-0119

Correction in:: Nat Ecol Evol. 2017 Oct; 1(10): 1585.

PMCID:: PMC5607633

Abstract Article PDF–915K

Select item 557002813.

Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium

Seongjun Park, Tracey A. Ruhlman, Mao-Lun Weng, Nahid H. Hajrah, Jamal S.M. Sabir, Robert K. Jansen

Genome Biol Evol. 2017 Jun; 9(6): 1766–1780. Published online 2017 Jul 6. doi: 10.1093/gbe/evx124

PMCID:: PMC5570028

Abstract Article PDF–2.3M

Select item 550246014.

Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding

Thomas R. Vincent, Marieta Avramova, James Canham, Peter Higgins, Natasha Bilkey, Sam T. Mugford, Marco Pitino, Masatsugu Toyota, Simon Gilroy, Anthony J. Miller, Saskia A. Hogenhout, Dale Sanders

Plant Cell. 2017 Jun; 29(6): 1460–1479. Published online 2017 May 30. doi: 10.1105/tpc.17.00136