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Items: 1 to 20 of 39

1.
Streptomyces sp. VN1, a producer of diverse metabolites including non-natural furan-type anticancer compound
Hue Thi Nguyen, Anaya Raj Pokhrel, Chung Thanh Nguyen, Van Thuy Thi Pham, Dipesh Dhakal, Haet Nim Lim, Hye Jin Jung, Tae-Su Kim, Tokutaro Yamaguchi, Jae Kyung Sohng
Sci Rep. 2020; 10: 1756. Published online 2020 Feb 4. doi: 10.1038/s41598-020-58623-1
PMCID:
PMC7000394
AbstractArticlePDF–3.6M
2.
Genome Mining of Marine-Derived Streptomyces sp. SCSIO 40010 Leads to Cytotoxic New Polycyclic Tetramate Macrolactams
Wei Liu, Wenjun Zhang, Hongbo Jin, Qingbo Zhang, Yuchan Chen, Xiaodong Jiang, Guangtao Zhang, Liping Zhang, Weimin Zhang, Zhigang She, Changsheng Zhang
Mar Drugs. 2019 Dec; 17(12): 663. Published online 2019 Nov 25. doi: 10.3390/md17120663
PMCID:
PMC6950151
AbstractArticlePDF–1.8M
3.
Comparison of Antibiotic Resistance Mechanisms in Antibiotic-Producing and Pathogenic Bacteria
Hiroshi Ogawara
Molecules. 2019 Oct; 24(19): 3430. Published online 2019 Sep 21. doi: 10.3390/molecules24193430
PMCID:
PMC6804068
AbstractArticlePDF–500K
4.
The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids
Yosi Nindita, Zhisheng Cao, Amirudin Akhmad Fauzi, Aiko Teshima, Yuya Misaki, Rukman Muslimin, Yingjie Yang, Yuh Shiwa, Hirofumi Yoshikawa, Michihira Tagami, Alexander Lezhava, Jun Ishikawa, Makoto Kuroda, Tsuyoshi Sekizuka, Kuninobu Inada, Haruyasu Kinashi, Kenji Arakawa
Sci Rep. 2019; 9: 10973. Published online 2019 Jul 29. doi: 10.1038/s41598-019-47406-y
PMCID:
PMC6662830
AbstractArticlePDF–1.7M
5.
Microarray‐based comparison of genetic differences between strains of Streptomyces turgidiscabies with focus on the pathogenicity island
MARJA AITTAMAA, PANU SOMERVUO, INTO LAAKSO, PETRI AUVINEN, JARI P. T. VALKONEN
Mol Plant Pathol. 2010 Nov; 11(6): 733–746. Published online 2010 Jun 30. doi: 10.1111/j.1364-3703.2010.00641.x
PMCID:
PMC6640499
AbstractArticlePDF–662K
6.
BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing
Lusine Khachatryan, Margriet E. M. Kraakman, Alexandra T. Bernards, Jeroen F. J. Laros
BMC Genomics. 2019; 20: 338. Published online 2019 May 6. doi: 10.1186/s12864-019-5723-0
PMCID:
PMC6501397
AbstractArticlePDF–1.6M
7.
Genome guided investigation of antibiotics producing actinomycetales strain isolated from a Macau mangrove ecosystem
Dini Hu, Yan Chen, Chenghang Sun, Tao Jin, Guangyi Fan, Qiwen Liao, Kai Meng Mok, Ming-Yuen Simon Lee
Sci Rep. 2018; 8: 14271. Published online 2018 Sep 24. doi: 10.1038/s41598-018-32076-z
PMCID:
PMC6155160
AbstractArticlePDF–2.2M
8.
Comparison of Strategies to Overcome Drug Resistance: Learning from Various Kingdoms
Hiroshi Ogawara
Molecules. 2018 Jun; 23(6): 1476. Published online 2018 Jun 18. doi: 10.3390/molecules23061476
PMCID:
PMC6100412
AbstractArticlePDF–2.7M
9.
Genome Mining of the Marine Actinomycete Streptomyces sp. DUT11 and Discovery of Tunicamycins as Anti-complement Agents
Xiao-Na Xu, Liang-Yu Chen, Chao Chen, Ya-Jie Tang, Feng-Wu Bai, Chun Su, Xin-Qing Zhao
Front Microbiol. 2018; 9: 1318. Published online 2018 Jun 20. doi: 10.3389/fmicb.2018.01318
PMCID:
PMC6019454
AbstractArticlePDF–3.1M
10.
Genome mining of Streptomyces scabrisporus NF3 reveals symbiotic features including genes related to plant interactions
Corina Diana Ceapă, Melissa Vázquez-Hernández, Stefany Daniela Rodríguez-Luna, Angélica Patricia Cruz Vázquez, Verónica Jiménez Suárez, Romina Rodríguez-Sanoja, Elena R. Alvarez-Buylla, Sergio Sánchez
PLoS One. 2018; 13(2): e0192618. Published online 2018 Feb 15. doi: 10.1371/journal.pone.0192618
PMCID:
PMC5813959
AbstractArticlePDF–20M
11.
Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages
Karen K. Klyczek, J. Alfred Bonilla, Deborah Jacobs-Sera, Tamarah L. Adair, Patricia Afram, Katherine G. Allen, Megan L. Archambault, Rahat M. Aziz, Filippa G. Bagnasco, Sarah L. Ball, Natalie A. Barrett, Robert C. Benjamin, Christopher J. Blasi, Katherine Borst, Mary A. Braun, Haley Broomell, Conner B. Brown, Zachary S. Brynell, Ashley B. Bue, Sydney O. Burke, William Casazza, Julia A. Cautela, Kevin Chen, Nitish S. Chimalakonda, Dylan Chudoff, Jade A. Connor, Trevor S. Cross, Kyra N. Curtis, Jessica A. Dahlke, Bethany M. Deaton, Sarah J. Degroote, Danielle M. DeNigris, Katherine C. DeRuff, Milan Dolan, David Dunbar, Marisa S. Egan, Daniel R. Evans, Abby K. Fahnestock, Amal Farooq, Garrett Finn, Christopher R. Fratus, Bobby L. Gaffney, Rebecca A. Garlena, Kelly E. Garrigan, Bryan C. Gibbon, Michael A. Goedde, Carlos A. Guerrero Bustamante, Melinda Harrison, Megan C. Hartwell, Emily L. Heckman, Jennifer Huang, Lee E. Hughes, Kathryn M. Hyduchak, Aswathi E. Jacob, Machika Kaku, Allen W. Karstens, Margaret A. Kenna, Susheel Khetarpal, Rodney A. King, Amanda L. Kobokovich, Hannah Kolev, Sai A. Konde, Elizabeth Kriese, Morgan E. Lamey, Carter N. Lantz, Jonathan S. Lapin, Temiloluwa O. Lawson, In Young Lee, Scott M. Lee, Julia Y. Lee-Soety, Emily M. Lehmann, Shawn C. London, A. Javier Lopez, Kelly C. Lynch, Catherine M. Mageeney, Tetyana Martynyuk, Kevin J. Mathew, Travis N. Mavrich, Christopher M. McDaniel, Hannah McDonald, C. Joel McManus, Jessica E. Medrano, Francis E. Mele, Jennifer E. Menninger, Sierra N. Miller, Josephine E. Minick, Courtney T. Nabua, Caroline K. Napoli, Martha Nkangabwa, Elizabeth A. Oates, Cassandra T. Ott, Sarah K. Pellerino, William J. Pinamont, Ross T. Pirnie, Marie C. Pizzorno, Emilee J. Plautz, Welkin H. Pope, Katelyn M. Pruett, Gabbi Rickstrew, Patrick A. Rimple, Claire A. Rinehart, Kayla M. Robinson, Victoria A. Rose, Daniel A. Russell, Amelia M. Schick, Julia Schlossman, Victoria M. Schneider, Chloe A. Sells, Jeremy W. Sieker, Morgan P. Silva, Marissa M. Silvi, Stephanie E. Simon, Amanda K. Staples, Isabelle L. Steed, Emily L. Stowe, Noah A. Stueven, Porter T. Swartz, Emma A. Sweet, Abigail T. Sweetman, Corrina Tender, Katrina Terry, Chrystal Thomas, Daniel S. Thomas, Allison R. Thompson, Lorianna Vanderveen, Rohan Varma, Hannah L. Vaught, Quynh D. Vo, Zachary T. Vonberg, Vassie C. Ware, Yasmene M. Warrad, Kaitlyn E. Wathen, Jonathan L. Weinstein, Jacqueline F. Wyper, Jakob R. Yankauskas, Christine Zhang, Graham F. Hatfull
PLoS One. 2017; 12(7): e0180517. Published online 2017 Jul 17. doi: 10.1371/journal.pone.0180517
PMCID:
PMC5513430
AbstractArticlePDF–19M
12.
Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes
Subramaniam Sivakumar, Palanivel Anitha, Balsubramanian Ramesh, Gopal Suresh
Bioinformation. 2017; 13(3): 73–77. Published online 2017 Mar 31. doi: 10.6026/97320630013073
PMCID:
PMC5450248
AbstractArticlePDF–717K
13.
Genomic data mining reveals a rich repertoire of transport proteins in Streptomyces
Zhan Zhou, Ning Sun, Shanshan Wu, Yong-Quan Li, Yufeng Wang
BMC Genomics. 2016; 17(Suppl 7): 510. Published online 2016 Aug 22. doi: 10.1186/s12864-016-2899-4
PMCID:
PMC5001237
AbstractArticlePDF–517K
14.
Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species
Jose C. Huguet-Tapia, Tristan Lefebure, Jonathan H. Badger, Dongli Guan, Gregg S. Pettis, Michael J. Stanhope, Rosemary Loria
Appl Environ Microbiol. 2016 Apr 1; 82(7): 2146–2155. Prepublished online 2016 Jan 29. Published online 2016 Mar 21. doi: 10.1128/AEM.03504-15
PMCID:
PMC4807529
AbstractArticlePDF–1.6M
15.
An Active Type I-E CRISPR-Cas System Identified in Streptomyces avermitilis
Yi Qiu, Shiwei Wang, Zhi Chen, Yajie Guo, Yuan Song
PLoS One. 2016; 11(2): e0149533. Published online 2016 Feb 22. doi: 10.1371/journal.pone.0149533
PMCID:
PMC4762764
AbstractArticlePDF–3.4M
16.
Genome Neighborhood Network Reveals Insights into Enediyne Biosynthesis and Facilitates Prediction and Prioritization for Discovery
Jeffrey D. Rudolf, Xiaohui Yan, Ben Shen
J Ind Microbiol Biotechnol. Author manuscript; available in PMC 2017 Mar 1.
Published in final edited form as: J Ind Microbiol Biotechnol. 2016 Mar; 43(0): 261–276. Published online 2015 Aug 29. doi: 10.1007/s10295-015-1671-0
PMCID:
PMC4753101
AbstractArticlePDF–4.9M
17.
A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins
James T. Morton, Stefan D. Freed, Shaun W. Lee, Iddo Friedberg
BMC Bioinformatics. 2015; 16: 381. Published online 2015 Nov 11. doi: 10.1186/s12859-015-0792-9
PMCID:
PMC4642626
AbstractArticlePDF–1.9M
18.
Draft Genome Sequence of Streptomyces ahygroscopicus subsp. wuyiensis CK-15, Isolated from Soil in Fujian Province, China
Beibei Ge, Yan Liu, Binghua Liu, Kecheng Zhang
Genome Announc. 2015 Sep-Oct; 3(5): e01125-15. Published online 2015 Oct 8. doi: 10.1128/genomeA.01125-15
PMCID:
PMC4599080
AbstractArticlePDF–156K
19.
Draft Genome Sequence of Streptomyces sp. Strain Wb2n-11, a Desert Isolate with Broad-Spectrum Antagonism against Soilborne Phytopathogens
Martina Köberl, Richard A. White, III, Sabine Erschen, Tarek F. El-Arabi, Janet K. Jansson, Gabriele Berg
Genome Announc. 2015 Jul-Aug; 3(4): e00860-15. Published online 2015 Aug 6. doi: 10.1128/genomeA.00860-15
PMCID:
PMC4541278
AbstractArticlePDF–159K
20.
Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures
Yinghan Fu, Zhenjiang Zech Xu, Zhi J. Lu, Shan Zhao, David H. Mathews
PLoS One. 2015; 10(6): e0130200. Published online 2015 Jun 15. doi: 10.1371/journal.pone.0130200
PMCID:
PMC4468099
AbstractArticlePDF–3.4M

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