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Items: 1 to 20 of 21

1.
CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction
Amani Al-Ajlan, Achraf El Allali
Interdiscip Sci. 2019; 11(4): 628–635. Published online 2018 Dec 27. doi: 10.1007/s12539-018-0313-4
PMCID:
PMC6841655
AbstractArticlePDF–1.1M
2.
An analysis of the IS6/IS26 family of insertion sequences: is it a single family?
Christopher J. Harmer, Ruth M. Hall
Microb Genom. 2019 Sep; 5(9): e000291. Published online 2019 Sep 5. doi: 10.1099/mgen.0.000291
PMCID:
PMC6807381
AbstractArticlePDF–14M
3.
Feature selection for gene prediction in metagenomic fragments
Amani Al-Ajlan, Achraf El Allali
BioData Min. 2018; 11: 9. Published online 2018 Jun 7. doi: 10.1186/s13040-018-0170-z
PMCID:
PMC6047368
AbstractArticlePDF–781K
4.
A Method for Identification of Selenoprotein Genes in Archaeal Genomes
Mingfeng Li, Yanzhao Huang, Yi Xiao
Genomics Proteomics Bioinformatics. 2009 Jun; 7(1-2): 62–70. Published online 2009 Jul 8. doi: 10.1016/S1672-0229(08)60034-0
PMCID:
PMC5054222
AbstractArticlePDF–759K
5.
A Manual Curation Strategy to Improve Genome Annotation: Application to a Set of Haloarchael Genomes
Friedhelm Pfeiffer, Dieter Oesterhelt
Life (Basel) 2015 Jun; 5(2): 1427–1444. Published online 2015 Jun 2. doi: 10.3390/life5021427
PMCID:
PMC4500146
AbstractArticlePDF–909K
6.
Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis
Guanghong Zuo, Zhao Xu, Bailin Hao
Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949
PMCID:
PMC4390887
AbstractArticlePDF–1019K
7.
Non-contiguous finished genome sequence and description of Halopiger goleamassiliensis sp. nov.
Hassani Imene Ikram, Robert Catherine, Michelle Caroline, Raoult Didier, Hacène Hocine, Desnues Christelle
Stand Genomic Sci. 2014 Jun 15; 9(3): 956–959. Published online 2013 Dec 31. doi: 10.4056/sigs.4618288
PMCID:
PMC4149028
AbstractArticlePDF–1.3M
8.
Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov.
Ikram Imene Hassani, Catherine Robert, Caroline Michelle, Didier Raoult, Hocine Hacène, Christelle Desnues
Stand Genomic Sci. 2013 Oct 16; 9(1): 160–174. Published online 2013 Oct 5. doi: 10.4056/sigs.4578289
PMCID:
PMC3910545
AbstractArticlePDF–1.5M
9.
Subcommittee on the taxonomy of Halobacteriaceae and Subcommittee on the taxonomy of Halomonadaceae: Minutes of the joint open meeting, 24 June 2013, Storrs, Connecticut, USA
Aharon Oren, Antonio Ventosa
Int J Syst Evol Microbiol. 2013 Sep; 63(Pt 9): 3540–3544. doi: 10.1099/ijs.0.055988-0
PMCID:
PMC3783009
ArticlePDF–82K
10.
Quantifying Homologous Replacement of Loci between Haloarchaeal Species
David Williams, J. Peter Gogarten, R. Thane Papke
Genome Biol Evol. 2012; 4(12): 1223–1244. Published online 2012 Nov 17. doi: 10.1093/gbe/evs098
PMCID:
PMC3542582
AbstractArticlePDF–1.0M
11.
Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux
Erin A. Lynch, Morgan G. I. Langille, Aaron Darling, Elizabeth G. Wilbanks, Caitlin Haltiner, Katie S. Y. Shao, Michael O. Starr, Clotilde Teiling, Timothy T. Harkins, Robert A. Edwards, Jonathan A. Eisen, Marc T. Facciotti
PLoS One. 2012; 7(7): e41389. Published online 2012 Jul 24. doi: 10.1371/journal.pone.0041389
PMCID:
PMC3404096
AbstractArticlePDF–960K
12.
Ribonucleotide reduction - horizontal transfer of a required function spans all three domains
Daniel Lundin, Simonetta Gribaldo, Eduard Torrents, Britt-Marie Sjöberg, Anthony M Poole
BMC Evol Biol. 2010; 10: 383. Published online 2010 Dec 10. doi: 10.1186/1471-2148-10-383
PMCID:
PMC3019208
AbstractArticlePDF–735K
13.
Estimating the Fraction of Non-Coding RNAs in Mammalian Transcriptomes
Yurong Xin, Giulio Quarta, Hin Hark Gan, Tamar Schlick
Bioinform Biol Insights. 2008; 2: 75–94. Published online 2008 Mar 1. doi: 10.4137/bbi.s443
PMCID:
PMC2735967
AbstractArticlePDF–670K
14.
A putative viral defence mechanism in archaeal cells
Reidun Lillestøl, Peter Redder, Roger A. Garrett, Kim Brügger
Archaea. 2006 Aug; 2(1): 59–72. Published online 2006 Jul 10. doi: 10.1155/2006/542818
PMCID:
PMC2685585
AbstractArticlePDF–1.2M
15.
Gene prediction in metagenomic fragments: A large scale machine learning approach
Katharina J Hoff, Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, Peter Meinicke
BMC Bioinformatics. 2008; 9: 217. Published online 2008 Apr 28. doi: 10.1186/1471-2105-9-217
PMCID:
PMC2409338
AbstractArticlePDF–441K
16.
Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves
Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai
PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622
PMCID:
PMC2237900
AbstractArticlePDF–541K
17.
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
Kira S Makarova, Alexander V Sorokin, Pavel S Novichkov, Yuri I Wolf, Eugene V Koonin
Biol Direct. 2007; 2: 33. Published online 2007 Nov 27. doi: 10.1186/1745-6150-2-33
PMCID:
PMC2222616
AbstractArticlePDF–593K
18.
Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China
Eulyn Pagaling, Richard D Haigh, William D Grant, Don A Cowan, Brian E Jones, Yanhe Ma, Antonio Ventosa, Shaun Heaphy
BMC Genomics. 2007; 8: 410. Published online 2007 Nov 9. doi: 10.1186/1471-2164-8-410
PMCID:
PMC2194725
AbstractArticlePDF–1.7M
19.
Modelling the evolution of the archeal tryptophan synthase
Rainer Merkl
BMC Evol Biol. 2007; 7: 59. Published online 2007 Apr 10. doi: 10.1186/1471-2148-7-59
PMCID:
PMC1854888
AbstractArticlePDF–576K
20.
Insertion Sequence Diversity in Archaea
J. Filée, P. Siguier, M. Chandler
Microbiol Mol Biol Rev. 2007 Mar; 71(1): 121–157. doi: 10.1128/MMBR.00031-06
PMCID:
PMC1847376
AbstractArticlePDF–2.7M

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