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Items: 1 to 20 of 23

1.
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
Xiao-Jian Qu, Michael J. Moore, De-Zhu Li, Ting-Shuang Yi
Plant Methods. 2019; 15: 50. Published online 2019 May 21. doi: 10.1186/s13007-019-0435-7
PMCID:
PMC6528300
AbstractArticlePDF–1.2M
2.
Molecular Structure and Phylogenetic Analyses of Complete Chloroplast Genomes of Two Aristolochia Medicinal Species
Jianguo Zhou, Xinlian Chen, Yingxian Cui, Wei Sun, Yonghua Li, Yu Wang, Jingyuan Song, Hui Yao
Int J Mol Sci. 2017 Sep; 18(9): 1839. Published online 2017 Aug 24. doi: 10.3390/ijms18091839
PMCID:
PMC5618488
AbstractArticlePDF–3.7M
3.
Comparative Analysis of the Chloroplast Genomic Information of Cunninghamia lanceolata (Lamb.) Hook with Sibling Species from the Genera Cryptomeria D. Don, Taiwania Hayata, and Calocedrus Kurz
Weiwei Zheng, Jinhui Chen, Zhaodong Hao, Jisen Shi
Int J Mol Sci. 2016 Jul; 17(7): 1084. Published online 2016 Jul 7. doi: 10.3390/ijms17071084
PMCID:
PMC4964460
AbstractArticlePDF–3.2M
4.
Chloroplast genomes: diversity, evolution, and applications in genetic engineering
Henry Daniell, Choun-Sea Lin, Ming Yu, Wan-Jung Chang
Genome Biol. 2016; 17: 134. Published online 2016 Jun 23. doi: 10.1186/s13059-016-1004-2
PMCID:
PMC4918201
AbstractArticlePDF–2.4M
5.
Divergence of RNA polymerase α subunits in angiosperm plastid genomes is mediated by genomic rearrangement
J. Chris Blazier, Tracey A. Ruhlman, Mao-Lun Weng, Sumaiyah K. Rehman, Jamal S. M. Sabir, Robert K. Jansen
Sci Rep. 2016; 6: 24595. Published online 2016 Apr 18. doi: 10.1038/srep24595
PMCID:
PMC4834550
AbstractArticlePDF–1.6M
6.
Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors
Anke Hein, Monika Polsakiewicz, Volker Knoop
BMC Evol Biol. 2016; 16: 23. Published online 2016 Jan 25. doi: 10.1186/s12862-016-0589-0
PMCID:
PMC4727281
AbstractArticlePDF–2.9M
7.
Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae
Yu Song, Wenpan Dong, Bing Liu, Chao Xu, Xin Yao, Jie Gao, Richard T. Corlett
Front Plant Sci. 2015; 6: 662. Published online 2015 Aug 25. doi: 10.3389/fpls.2015.00662
PMCID:
PMC4548089
AbstractArticlePDF–2.1M
8.
Plastid primers for angiosperm phylogenetics and phylogeography
Linda M. Prince
Appl Plant Sci. 2015 Jun; 3(6): apps.1400085. Published online 2015 Jun 9. doi: 10.3732/apps.1400085
PMCID:
PMC4467757
AbstractArticlePDF–576K
9.
Long-term morphological stasis maintained by a plant–pollinator mutualism
Charles C. Davis, Hanno Schaefer, Zhenxiang Xi, David A. Baum, Michael J. Donoghue, Luke J. Harmon
Proc Natl Acad Sci U S A. 2014 Apr 22; 111(16): 5914–5919. Published online 2014 Apr 4. doi: 10.1073/pnas.1403157111
PMCID:
PMC4000796
AbstractArticlePDF–984K
10.
Complete Genes May Pass from Food to Human Blood
Sándor Spisák, Norbert Solymosi, Péter Ittzés, András Bodor, Dániel Kondor, Gábor Vattay, Barbara K. Barták, Ferenc Sipos, Orsolya Galamb, Zsolt Tulassay, Zoltán Szállási, Simon Rasmussen, Thomas Sicheritz-Ponten, Søren Brunak, Béla Molnár, István Csabai
PLoS One. 2013; 8(7): e69805. Published online 2013 Jul 30. doi: 10.1371/journal.pone.0069805
PMCID:
PMC3728338
AbstractArticlePDF–730K
11.
The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms
Nalapalli Samson, Michael G. Bausher, Seung-Bum Lee, Robert K. Jansen, Henry Daniell
Plant Biotechnol J. Author manuscript; available in PMC 2012 Oct 17.
Published in final edited form as: Plant Biotechnol J. 2007 Mar; 5(2): 339–353. doi: 10.1111/j.1467-7652.2007.00245.x
PMCID:
PMC3473179
AbstractArticlePDF–3.1M
12.
Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes
Christopher Saski, Seung-Bum Lee, Siri Fjellheim, Chittibabu Guda, Robert K. Jansen, Hong Luo, Jeffrey Tomkins, Odd Arne Rognli, Henry Daniell, Jihong Liu Clarke
Theor Appl Genet. Author manuscript; available in PMC 2009 Apr 29.
Published in final edited form as: Theor Appl Genet. 2007 Aug; 115(4): 571–590. Published online 2007 May 30. doi: 10.1007/s00122-007-0567-4
Correction in:
Theor Appl Genet. 2007 Aug; 115(4): 591.
PMCID:
PMC2674615
AbstractArticlePDF–2.5M
13.
Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat
Maria D Logacheva, Tahir H Samigullin, Amit Dhingra, Aleksey A Penin
BMC Plant Biol. 2008; 8: 59. Published online 2008 May 20. doi: 10.1186/1471-2229-8-59
PMCID:
PMC2430205
AbstractArticlePDF–792K
14.
Relationship between mRNA secondary structure and sequence variability in Chloroplast genes: possible life history implications
Neeraja M Krishnan, Hervé Seligmann, Basuthkar J Rao
BMC Genomics. 2008; 9: 48. Published online 2008 Jan 28. doi: 10.1186/1471-2164-9-48
PMCID:
PMC2276208
AbstractArticlePDF–650K
15.
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
Linda A Raubeson, Rhiannon Peery, Timothy W Chumley, Chris Dziubek, H Matthew Fourcade, Jeffrey L Boore, Robert K Jansen
BMC Genomics. 2007; 8: 174. Published online 2007 Jun 15. doi: 10.1186/1471-2164-8-174
PMCID:
PMC1925096
AbstractArticlePDF–1.4M
16.
A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies
Claude Lemieux, Christian Otis, Monique Turmel
BMC Biol. 2007; 5: 2. Published online 2007 Jan 12. doi: 10.1186/1741-7007-5-2
PMCID:
PMC1781420
AbstractArticlePDF–1.3M
17.
Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids
Zhengqiu Cai, Cynthia Penaflor, Jennifer V Kuehl, James Leebens-Mack, John E Carlson, Claude W dePamphilis, Jeffrey L Boore, Robert K Jansen
BMC Evol Biol. 2006; 6: 77. Published online 2006 Oct 4. doi: 10.1186/1471-2148-6-77
PMCID:
PMC1626487
AbstractArticlePDF–1.0M
18.
The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms
Michael G Bausher, Nameirakpam D Singh, Seung-Bum Lee, Robert K Jansen, Henry Daniell
BMC Plant Biol. 2006; 6: 21. Published online 2006 Sep 30. doi: 10.1186/1471-2229-6-21
PMCID:
PMC1599732
AbstractArticlePDF–390K
19.
Complete plastid genome sequence of Daucus carota: Implications for biotechnology and phylogeny of angiosperms
Tracey Ruhlman, Seung-Bum Lee, Robert K Jansen, Jessica B Hostetler, Luke J Tallon, Christopher D Town, Henry Daniell
BMC Genomics. 2006; 7: 222. Published online 2006 Aug 31. doi: 10.1186/1471-2164-7-222
PMCID:
PMC1579219
AbstractArticlePDF–1.0M
20.
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
Danny W Rice, Jeffrey D Palmer
BMC Biol. 2006; 4: 31. Published online 2006 Sep 6. doi: 10.1186/1741-7007-4-31
PMCID:
PMC1570145
AbstractArticlePDF–602K

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