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Select item 62754601.

Sequana coverage: detection and characterization of genomic variations using running median and mixture models

Dimitri Desvillechabrol, Christiane Bouchier, Sean Kennedy, Thomas Cokelaer

Gigascience. 2018 Dec; 7(12): giy110. Published online 2018 Sep 6. doi: 10.1093/gigascience/giy110

PMCID:: PMC6275460

Abstract Article PDF–2.6M

Select item 61685682.

Assembly of Schizosaccharomyces cryophilus chromosomes and their comparative genomic analyses revealed principles of genome evolution of the haploid fission yeasts

Lajos Ács-Szabó, László Attila Papp, Zsuzsa Antunovics, Matthias Sipiczki, Ida Miklós

Sci Rep. 2018; 8: 14629. Published online 2018 Oct 2. doi: 10.1038/s41598-018-32525-9

PMCID:: PMC6168568

Abstract Article PDF–2.9M

Select item 58126513.

Identification of fungi in shotgun metagenomics datasets

Paul D. Donovan, Gabriel Gonzalez, Desmond G. Higgins, Geraldine Butler, Kimihito Ito

PLoS One. 2018; 13(2): e0192898. Published online 2018 Feb 14. doi: 10.1371/journal.pone.0192898

PMCID:: PMC5812651

Abstract Article PDF–5.9M

Select item 56795104.

Sequence-based information-theoretic features for gene essentiality prediction

Dawit Nigatu, Patrick Sobetzko, Malik Yousef, Werner Henkel

BMC Bioinformatics. 2017; 18: 473. Published online 2017 Nov 9. doi: 10.1186/s12859-017-1884-5

PMCID:: PMC5679510

Abstract Article PDF–845K

Select item 56409335.

Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li, Ronald R. Breaker

BMC Genomics. 2017; 18: 785. Published online 2017 Oct 13. doi: 10.1186/s12864-017-4171-y

PMCID:: PMC5640933

Abstract Article PDF–1.5M

Select item 53911896.

Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB

Udita Upadhyay, Suchita Srivastava, Indu Khatri, Jagpreet Singh Nanda, Srikrishna Subramanian, Amit Arora, Jagmohan Singh

Mol Biol Cell. 2017 Apr 15; 28(8): 1132–1146. doi: 10.1091/mbc.E16-07-0485

PMCID:: PMC5391189

Abstract Article PDF–3.0M

Select item 53321587.

An aging-independent replicative lifespan in a symmetrically dividing eukaryote

Eric C Spivey, Stephen K Jones, Jr, James R Rybarski, Fatema A Saifuddin, Ilya J Finkelstein

eLife. 2017; 6: e20340. Published online 2017 Jan 31. doi: 10.7554/eLife.20340

PMCID:: PMC5332158

Abstract Article PDF–1.5M

Select item 52930768.

Establishment of expression-state boundaries by Rif1 and Taz1 in fission yeast

Tea Toteva, Bethany Mason, Yutaka Kanoh, Peter Brøgger, Daniel Green, Janne Verhein-Hansen, Hisao Masai, Geneviève Thon

Proc Natl Acad Sci U S A. 2017 Jan 31; 114(5): 1093–1098. Published online 2017 Jan 17. doi: 10.1073/pnas.1614837114

PMCID:: PMC5293076

Abstract Article PDF–1.1M

Select item 50633829.

Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe

Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist

PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950

PMCID:: PMC5063382

Abstract Article PDF–4.1M

Select item 464770910.

misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads

Xiao Zhu, Henry C. M. Leung, Rongjie Wang, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang

BMC Bioinformatics. 2015; 16: 386. Published online 2015 Nov 16. doi: 10.1186/s12859-015-0818-3

PMCID:: PMC4647709

Abstract Article PDF–1.6M

Select item 438150611.

Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses

Noppon Lertwattanasakul, Tomoyuki Kosaka, Akira Hosoyama, Yutaka Suzuki, Nadchanok Rodrussamee, Minenosuke Matsutani, Masayuki Murata, Naoko Fujimoto, Suprayogi, Keiko Tsuchikane, Savitree Limtong, Nobuyuki Fujita, Mamoru Yamada

Biotechnol Biofuels. 2015; 8: 47. Published online 2015 Mar 18. doi: 10.1186/s13068-015-0227-x

PMCID:: PMC4381506

Abstract Article PDF–1.3M

Select item 425210412.

PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM and Look Ahead Approach

Xiao Zhu, Henry C. M. Leung, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang

PLoS One. 2014; 9(12): e114253. Published online 2014 Dec 2. doi: 10.1371/journal.pone.0114253

PMCID:: PMC4252104

Abstract Article PDF–584K

Select item 412014413.

RandAL: a randomized approach to aligning DNA sequences to reference genomes

Nam S Vo, Quang Tran, Nobal Niraula, Vinhthuy Phan

BMC Genomics. 2014; 15(Suppl 5): S2. Published online 2014 Jul 14. doi: 10.1186/1471-2164-15-S5-S2

PMCID:: PMC4120144

Abstract Article PDF–1.2M

Select item 373496414.

Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina

E.D. Tretter, E.M. Johnson, Y. Wang, P. Kandel, M.M. White

Persoonia. 2013 Jun; 30: 106–125. Published online 2013 Mar 20. doi: 10.3767/003158513X666394

PMCID:: PMC3734964

Abstract Article PDF–786K

Select item 368559015.

Two CDC42 paralogs modulate C. neoformans thermotolerance and morphogenesis under host physiological conditions

Elizabeth R. Ballou, Connie B. Nichols, Kathleen J Miglia, Lukasz Kozubowski, J. Andrew Alspaugh

Mol Microbiol. Author manuscript; available in PMC 2013 Jun 18.

Published in final edited form as: Mol Microbiol. 2010 Feb; 75(3): 763–780. Published online 2009 Dec 16. doi: 10.1111/j.1365-2958.2009.07019.x

PMCID:: PMC3685590

Abstract Article PDF–5.1M

Select item 353189216.

Fission Yeast Sec3 Bridges the Exocyst Complex to the Actin Cytoskeleton

Isabelle Jourdain, Hannah C Dooley, Takashi Toda

Traffic. 2012 Nov; 13(11): 1481–1495. Published online 2012 Sep 7. doi: 10.1111/j.1600-0854.2012.01408.x

PMCID:: PMC3531892

Abstract Article PDF–48M

Select item 341111117.

Quantitative single-molecule microscopy reveals that CENP-A^Cnp1 deposition occurs during G2 in fission yeast

David Lando, Ulrike Endesfelder, Harald Berger, Lakxmi Subramanian, Paul D. Dunne, James McColl, David Klenerman, Antony M. Carr, Markus Sauer, Robin C. Allshire, Mike Heilemann, Ernest D. Laue

Open Biol. 2012 Jul; 2(7): 120078. doi: 10.1098/rsob.120078