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Select item 70471351.

Composition and functional profiling of the microbiota in the casts of Eisenia fetida during vermicomposting of brewers’ spent grains

Marilena Budroni, Ilaria Mannazzu, Severino Zara, Sara Saba, Antonio Pais, Giacomo Zara

Biotechnol Rep (Amst) 2020 Mar; 25: e00439. Published online 2020 Feb 20. doi: 10.1016/j.btre.2020.e00439

PMCID:: PMC7047135

Abstract Article PDF–1.8M

Select item 68756642.

Effects of rhizoma peanut cultivars (Arachis glabrata Benth.) on the soil bacterial diversity and predicted function in nitrogen fixation

Xiao‐Bo Wang, Chih‐Ming Hsu, José C. B. Dubeux, Jr., Cheryl Mackowiak, Ann Blount, Xing‐Guo Han, Hui‐Ling Liao

Ecol Evol. 2019 Nov; 9(22): 12676–12687. Published online 2019 Nov 5. doi: 10.1002/ece3.5735

PMCID:: PMC6875664

Abstract Article PDF–1.2M

Select item 68480303.

Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary

Maria W. Smith, Lydie Herfort, Adam R. Rivers, Holly M. Simon

Front Microbiol. 2019; 10: 2475. Published online 2019 Nov 5. doi: 10.3389/fmicb.2019.02475

PMCID:: PMC6848030

Abstract Article PDF–3.1M

Select item 66874394.

Metagenome of Acropora palmata coral rubble: Potential metabolic pathways and diversity in the reef ecosystem

Andrés Sánchez-Quinto, Luisa I. Falcón

PLoS One. 2019; 14(8): e0220117. Published online 2019 Aug 8. doi: 10.1371/journal.pone.0220117

PMCID:: PMC6687439

Abstract Article PDF–1.4M

Select item 65908235.

Defoliation management and grass growth habits modulated the soil microbial community of turfgrass systems

Qing Xia, Huaihai Chen, Tianyou Yang, Grady Miller, Wei Shi

PLoS One. 2019; 14(6): e0218967. Published online 2019 Jun 24. doi: 10.1371/journal.pone.0218967

PMCID:: PMC6590823

Abstract Article PDF–1.7M

Select item 62645156.

Predominance and high diversity of genes associated to denitrification in metagenomes of subantarctic coastal sediments exposed to urban pollution

Priscila A. Calderoli, Fernando J. Espínola, Hebe M. Dionisi, Mónica N. Gil, Janet K. Jansson, Mariana Lozada

PLoS One. 2018; 13(11): e0207606. Published online 2018 Nov 29. doi: 10.1371/journal.pone.0207606

PMCID:: PMC6264515

Abstract Article PDF–2.3M

Select item 61102767.

Profiling of the Microbiome Associated With Nitrogen Removal During Vermifiltration of Wastewater From a Commercial Dairy

Ellen Lai, Matthias Hess, Frank M. Mitloehner

Front Microbiol. 2018; 9: 1964. Published online 2018 Aug 20. doi: 10.3389/fmicb.2018.01964

PMCID:: PMC6110276

Abstract Article PDF–6.5M

Select item 60188008.

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession

Rüdiger Ortiz-Álvarez, Noah Fierer, Asunción de los Ríos, Emilio O. Casamayor, Albert Barberán

ISME J. 2018 Jul; 12(7): 1658–1667. Published online 2018 Feb 20. doi: 10.1038/s41396-018-0076-2

PMCID:: PMC6018800

Abstract Article PDF–991K

Select item 58178759.

Impact of Glyphosate on the Rhizosphere Microbial Communities of An EPSPS-Transgenic Soybean Line ZUTS31 by Metagenome Sequencing

Gui-Hua Lu, Xiao-Mei Hua, Jing Cheng, Yin-Ling Zhu, Gu-Hao Wang, Yan-Jun Pang, Rong-Wu Yang, Lei Zhang, Huixia Shou, Xiao-Ming Wang, Jinliang Qi, Yong-Hua Yang

Curr Genomics. 2018 Jan; 19(1): 36–49. Published online 2018 Jan. doi: 10.2174/1389202918666170705162405

PMCID:: PMC5817875

Abstract Article PDF–2.4M

Select item 532412210.

Effects of reciprocal transplantation on the microbiome and putative nitrogen cycling functions of the intertidal sponge, Hymeniacidon heliophila

Brooke L. Weigel, Patrick M. Erwin

Sci Rep. 2017; 7: 43247. Published online 2017 Feb 24. doi: 10.1038/srep43247

PMCID:: PMC5324122

Abstract Article PDF–1.0M

Select item 531934611.

Organization of biogeochemical nitrogen pathways with switch-like adjustment in fluctuating soil redox conditions

Sanjay Lamba, Soumen Bera, Mubasher Rashid, Alexander B. Medvinsky, Gui-Quan Sun, Claudia Acquisti, Amit Chakraborty, Bai-Lian Li

R Soc Open Sci. 2017 Jan; 4(1): 160768. Published online 2017 Jan 11. doi: 10.1098/rsos.160768

PMCID:: PMC5319346

Abstract Article PDF–1.0M

Select item 499540312.

Nitrogen fixation and nifH diversity in human gut microbiota

Katsura Igai, Manabu Itakura, Suguru Nishijima, Hirohito Tsurumaru, Wataru Suda, Takumi Tsutaya, Eriko Tomitsuka, Kiyoshi Tadokoro, Jun Baba, Shingo Odani, Kazumi Natsuhara, Ayako Morita, Minoru Yoneda, Andrew R. Greenhill, Paul F. Horwood, Jun-ichi Inoue, Moriya Ohkuma, Yuichi Hongoh, Taro Yamamoto, Peter M. Siba, Masahira Hattori, Kiwamu Minamisawa, Masahiro Umezaki

Sci Rep. 2016; 6: 31942. Published online 2016 Aug 24. doi: 10.1038/srep31942

PMCID:: PMC4995403

Abstract Article PDF–1007K

Select item 498160113.

Species Divergence vs. Functional Convergence Characterizes Crude Oil Microbial Community Assembly

Yong Nie, Jie-Yu Zhao, Yue-Qin Tang, Peng Guo, Yunfeng Yang, Xiao-Lei Wu, Fangqing Zhao

Front Microbiol. 2016; 7: 1254. Published online 2016 Aug 12. doi: 10.3389/fmicb.2016.01254

PMCID:: PMC4981601

Abstract Article PDF–2.3M

Select item 471862314.

Characterization of Bacterial Communities in Selected Smokeless Tobacco Products Using 16S rDNA Analysis

Robert E. Tyx, Stephen B. Stanfill, Lisa M. Keong, Angel J. Rivera, Glen A. Satten, Clifford H. Watson

PLoS One. 2016; 11(1): e0146939. Published online 2016 Jan 19. doi: 10.1371/journal.pone.0146939

PMCID:: PMC4718623

Abstract Article PDF–1.2M

Select item 435646515.

Metagenomic Analysis of the Bacterial Community Associated with the Taproot of Sugar Beet

Hirohito Tsurumaru, Takashi Okubo, Kazuyuki Okazaki, Megumi Hashimoto, Kaori Kakizaki, Eiko Hanzawa, Hiroyuki Takahashi, Noriyuki Asanome, Fukuyo Tanaka, Yasuyo Sekiyama, Seishi Ikeda, Kiwamu Minamisawa

Microbes Environ. 2015 Mar; 30(1): 63–69. Published online 2015 Feb 14. doi: 10.1264/jsme2.ME14109

PMCID:: PMC4356465

Abstract Article PDF–324K

Select item 361342416.

Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach

Ke Yu, Tong Zhang

PLoS One. 2013; 8(4): e59831. Published online 2013 Apr 1. doi: 10.1371/journal.pone.0059831

PMCID:: PMC3613424

Abstract Article PDF–1.1M

Select item 352261917.

Structural and Functional Insights from the Metagenome of an Acidic Hot Spring Microbial Planktonic Community in the Colombian Andes

Diego Javier Jiménez, Fernando Dini Andreote, Diego Chaves, José Salvador Montaña, Cesar Osorio-Forero, Howard Junca, María Mercedes Zambrano, Sandra Baena

PLoS One. 2012; 7(12): e52069. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0052069

PMCID:: PMC3522619

Abstract Article PDF–1.7M

Select item 337460918.

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Kelley, Barbara Methé, Patrick D. Schloss, Dirk Gevers, Makedonka Mitreva, Curtis Huttenhower

PLoS Comput Biol. 2012 Jun; 8(6): e1002358. Published online 2012 Jun 13. doi: 10.1371/journal.pcbi.1002358

PMCID:: PMC3374609

Abstract Article PDF–784K

Select item 310577219.

An integrative study of a meromictic lake ecosystem in Antarctica

Federico M Lauro, Matthew Z DeMaere, Sheree Yau, Mark V Brown, Charmaine Ng, David Wilkins, Mark J Raftery, John AE Gibson, Cynthia Andrews-Pfannkoch, Matthew Lewis, Jeffrey M Hoffman, Torsten Thomas, Ricardo Cavicchioli

ISME J. 2011 May; 5(5): 879–895. Published online 2010 Dec 2. doi: 10.1038/ismej.2010.185