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Items: 16

1.
Whole‐genome comparison between the type strain of Halobacterium salinarum (DSM 3754T) and the laboratory strains R1 and NRC‐1
Friedhelm Pfeiffer, Gerald Losensky, Anita Marchfelder, Bianca Habermann, Mike Dyall‐Smith
Microbiologyopen. 2020 Feb; 9(2): e974. Published online 2019 Dec 3. doi: 10.1002/mbo3.974
PMCID:
PMC7002104
AbstractArticlePDF–2.7M
2.
An analysis of the IS6/IS26 family of insertion sequences: is it a single family?
Christopher J. Harmer, Ruth M. Hall
Microb Genom. 2019 Sep; 5(9): e000291. Published online 2019 Sep 5. doi: 10.1099/mgen.0.000291
PMCID:
PMC6807381
AbstractArticlePDF–14M
3.
The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
Friedhelm Pfeiffer, Anita Marchfelder, Bianca Habermann, Mike L. Dyall-Smith
Microbiol Resour Announc. 2019 Jul; 8(28): e00429-19. Published online 2019 Jul 11. doi: 10.1128/MRA.00429-19
PMCID:
PMC6624760
AbstractArticlePDF–150K
4.
N-Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility
Marianna Zaretsky, Cynthia L. Darnell, Amy K. Schmid, Jerry Eichler
Front Microbiol. 2019; 10: 1367. Published online 2019 Jun 18. doi: 10.3389/fmicb.2019.01367
PMCID:
PMC6591318
AbstractArticlePDF–1.9M
5.
Copy number variation is associated with gene expression change in archaea
Keely A. Dulmage, Cynthia L. Darnell, Angie Vreugdenhil, Amy K. Schmid
Microb Genom. 2018 Sep; 4(9): e000210. Published online 2018 Aug 24. doi: 10.1099/mgen.0.000210
PMCID:
PMC6202454
AbstractArticlePDF–3.2M
6.
A Method for Identification of Selenoprotein Genes in Archaeal Genomes
Mingfeng Li, Yanzhao Huang, Yi Xiao
Genomics Proteomics Bioinformatics. 2009 Jun; 7(1-2): 62–70. Published online 2009 Jul 8. doi: 10.1016/S1672-0229(08)60034-0
PMCID:
PMC5054222
AbstractArticlePDF–759K
7.
A Manual Curation Strategy to Improve Genome Annotation: Application to a Set of Haloarchael Genomes
Friedhelm Pfeiffer, Dieter Oesterhelt
Life (Basel) 2015 Jun; 5(2): 1427–1444. Published online 2015 Jun 2. doi: 10.3390/life5021427
PMCID:
PMC4500146
AbstractArticlePDF–909K
8.
Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life
Livia S. Zaramela, Ricardo Z. N. Vêncio, Felipe ten-Caten, Nitin S. Baliga, Tie Koide
PLoS One. 2014; 9(9): e107680. Published online 2014 Sep 19. doi: 10.1371/journal.pone.0107680
PMCID:
PMC4169567
AbstractArticlePDF–3.2M
9.
An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation
Elisabeth J. Wurtmann, Alexander V. Ratushny, Min Pan, Karlyn D. Beer, John D. Aitchison, Nitin S. Baliga
Mol Microbiol. Author manuscript; available in PMC 2015 Apr 1.
Published in final edited form as: Mol Microbiol. 2014 Apr; 92(2): 369–382. Published online 2014 Mar 19. doi: 10.1111/mmi.12564
PMCID:
PMC4060883
AbstractArticlePDF–1.1M
10.
Model Organisms Retain an “Ecological Memory” of Complex Ecologically Relevant Environmental Variation
Karlyn D. Beer, Elisabeth J. Wurtmann, Nicolás Pinel, Nitin S. Baliga
Appl Environ Microbiol. 2014 Mar; 80(6): 1821–1831. doi: 10.1128/AEM.03280-13
PMCID:
PMC3957629
AbstractArticlePDF–3.1M
11.
Transcriptome-wide discovery of circular RNAs in Archaea
Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek
Nucleic Acids Res. 2012 Apr; 40(7): 3131–3142. Published online 2011 Dec 2. doi: 10.1093/nar/gkr1009
PMCID:
PMC3326292
AbstractArticlePDF–4.5M
12.
Niche adaptation by expansion and reprogramming of general transcription factors
Serdar Turkarslan, David J Reiss, Goodwin Gibbins, Wan Lin Su, Min Pan, J Christopher Bare, Christopher L Plaisier, Nitin S Baliga
Mol Syst Biol. 2011; 7: 554. Published online 2011 Nov 22. doi: 10.1038/msb.2011.87
PMCID:
PMC3261711
AbstractArticlePDF–1.9M
13.
Prevalence of transcription promoters within archaeal operons and coding sequences
Tie Koide, David J Reiss, J Christopher Bare, Wyming Lee Pang, Marc T Facciotti, Amy K Schmid, Min Pan, Bruz Marzolf, Phu T Van, Fang-Yin Lo, Abhishek Pratap, Eric W Deutsch, Amelia Peterson, Dan Martin, Nitin S Baliga
Mol Syst Biol. 2009; 5: 285. Published online 2009 Jun 16. doi: 10.1038/msb.2009.42
PMCID:
PMC2710873
AbstractArticlePDF–2.7M
14.
Insertion Sequence Diversity in Archaea
J. Filée, P. Siguier, M. Chandler
Microbiol Mol Biol Rev. 2007 Mar; 71(1): 121–157. doi: 10.1128/MMBR.00031-06
PMCID:
PMC1847376
AbstractArticlePDF–2.7M
15.
Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs
Uri Laserson, Hin Hark Gan, Tamar Schlick
Nucleic Acids Res. 2005; 33(18): 6057–6069. Published online 2005 Oct 27. doi: 10.1093/nar/gki911
PMCID:
PMC1270951
AbstractArticlePDF–691K
16.
Genome sequence of Halobacterium species NRC-1
Wailap Victor Ng, Sean P. Kennedy, Gregory G. Mahairas, Brian Berquist, Min Pan, Hem Dutt Shukla, Stephen R. Lasky, Nitin S. Baliga, Vesteinn Thorsson, Jennifer Sbrogna, Steven Swartzell, Douglas Weir, John Hall, Timothy A. Dahl, Russell Welti, Young Ah Goo, Brent Leithauser, Kim Keller, Randy Cruz, Michael J. Danson, David W. Hough, Deborah G. Maddocks, Peter E. Jablonski, Mark P. Krebs, Christine M. Angevine, Heather Dale, Thomas A. Isenbarger, Ronald F. Peck, Mechthild Pohlschroder, John L. Spudich, Kwang-Hwan Jung, Maqsudul Alam, Tracey Freitas, Shaobin Hou, Charles J. Daniels, Patrick P. Dennis, Arina D. Omer, Holger Ebhardt, Todd M. Lowe, Ping Liang, Monica Riley, Leroy Hood, Shiladitya DasSarma
Proc Natl Acad Sci U S A. 2000 Oct 24; 97(22): 12176–12181. Published online 2000 Oct 3. doi: 10.1073/pnas.190337797
PMCID:
PMC17314
AbstractArticlePDF–295K

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