Full text in PMC (nucleotide) for Gene (Select 1441416) - PMC

Guillaume Borrel, Nicolas Parisot, Hugh MB Harris, Eric Peyretaillade, Nadia Gaci, William Tottey, Olivier Bardot, Kasie Raymann, Simonetta Gribaldo, Pierre Peyret, Paul W O’Toole, Jean-François Brugère

BMC Genomics. 2014; 15: 679. Published online 2014 Aug 13. doi: 10.1186/1471-2164-15-679

PMCID:: PMC4153887

Abstract Article PDF–1.5M

Select item 27883625.

The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments

Isaam Saeed, Saman K Halgamuge

BMC Genomics. 2009; 10(Suppl 3): S10. Published online 2009 Dec 3. doi: 10.1186/1471-2164-10-S3-S10

PMCID:: PMC2788362

Abstract Article PDF–1.0M

Select item 27359676.

Estimating the Fraction of Non-Coding RNAs in Mammalian Transcriptomes

Yurong Xin, Giulio Quarta, Hin Hark Gan, Tamar Schlick

Bioinform Biol Insights. 2008; 2: 75–94. Published online 2008 Mar 1. doi: 10.4137/bbi.s443

PMCID:: PMC2735967

Abstract Article PDF–670K

Select item 27014937.

Fine-structured multi-scaling long-range correlations in completely sequenced genomes—features, origin, and classification

Tobias A. Knoch, Markus Göker, Rudolf Lohner, Anis Abuseiris, Frank G. Grosveld

Eur Biophys J. 2009 Jul; 38(6): 757–779. Published online 2009 Jun 17. doi: 10.1007/s00249-009-0489-y

PMCID:: PMC2701493

Abstract Article PDF–1.5M

Select item 26855858.

A putative viral defence mechanism in archaeal cells

Reidun Lillestøl, Peter Redder, Roger A. Garrett, Kim Brügger

Archaea. 2006 Aug; 2(1): 59–72. Published online 2006 Jul 10. doi: 10.1155/2006/542818

PMCID:: PMC2685585

Abstract Article PDF–1.2M

Select item 26855679.

Remarkable sequence signatures in archaeal genomes

Ahmed Fadiel, Stuart Lithwick, Gopi Ganji, Stephen W. Scherer

Archaea. 2003 Oct; 1(3): 185–190. Published online 2003 Feb 19. doi: 10.1155/2003/458235

PMCID:: PMC2685567

Abstract Article PDF–118K

Select item 268554810.

Identification of replication origins in archaeal genomes based on the Z-curve method

Ren Zhang, Chun-Ting Zhang

Archaea. 2005 May; 1(5): 335–346. Published online 2004 Nov 9. doi: 10.1155/2005/509646

PMCID:: PMC2685548

Abstract Article PDF–228K

Select item 223790011.

Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622

PMCID:: PMC2237900

Abstract Article PDF–541K

Select item 222261612.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

Kira S Makarova, Alexander V Sorokin, Pavel S Novichkov, Yuri I Wolf, Eugene V Koonin

Biol Direct. 2007; 2: 33. Published online 2007 Nov 27. doi: 10.1186/1745-6150-2-33

PMCID:: PMC2222616

Abstract Article PDF–593K

Select item 185488813.

Modelling the evolution of the archeal tryptophan synthase

Rainer Merkl

BMC Evol Biol. 2007; 7: 59. Published online 2007 Apr 10. doi: 10.1186/1471-2148-7-59

PMCID:: PMC1854888

Abstract Article PDF–576K

Select item 184737614.

Insertion Sequence Diversity in Archaea

J. Filée, P. Siguier, M. Chandler

Microbiol Mol Biol Rev. 2007 Mar; 71(1): 121–157. doi: 10.1128/MMBR.00031-06

PMCID:: PMC1847376

Abstract Article PDF–2.7M

Select item 153403815.

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

Vasily Tcherepanov, Angelika Ehlers, Chris Upton

BMC Genomics. 2006; 7: 150. Published online 2006 Jun 13. doi: 10.1186/1471-2164-7-150

PMCID:: PMC1534038

Abstract Article PDF–1.0M

Select item 127095116.

Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs

Uri Laserson, Hin Hark Gan, Tamar Schlick

Nucleic Acids Res. 2005; 33(18): 6057–6069. Published online 2005 Oct 27. doi: 10.1093/nar/gki911

PMCID:: PMC1270951

Abstract Article PDF–691K

Select item 116025817.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue

Nucleic Acids Res. 2005 Jul 1; 33(Web Server issue): W471–W479. Published online 2005 Jun 27. doi: 10.1093/nar/gki498

PMCID:: PMC1160258

Abstract Article PDF–375K

Select item 55594218.

Gene fusions and gene duplications: relevance to genomic annotation and functional analysis

Margrethe H Serres, Monica Riley

BMC Genomics. 2005; 6: 33. Published online 2005 Mar 9. doi: 10.1186/1471-2164-6-33

PMCID:: PMC555942

Abstract Article PDF–374K

Select item 53387119.

A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land

Fabia U Battistuzzi, Andreia Feijao, S Blair Hedges

BMC Evol Biol. 2004; 4: 44. Published online 2004 Nov 9. doi: 10.1186/1471-2148-4-44

PMCID:: PMC533871

Abstract Article PDF–593K

Select item 49764720.

Characterization of a Trinucleotide Repeat Sequence (CGG)₅ and Potential Use in Restriction Fragment Length Polymorphism Typing of Mycobacterium tuberculosis

Yayoi Otsuka, Pawel Parniewski, Zofia Zwolska, Masatake Kai, Tomoko Fujino, Fumiko Kirikae, Emiko Toyota, Koichiro Kudo, Tadatoshi Kuratsuji, Teruo Kirikae

J Clin Microbiol. 2004 Aug; 42(8): 3538–3548. doi: 10.1128/JCM.42.8.3538-3548.2004