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Select item 70021071.

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species

Trudy M. Wassenaar, Se‐Ran Jun, Michael Robeson, David W. Ussery

Microbiologyopen. 2020 Feb; 9(2): e973. Published online 2019 Nov 19. doi: 10.1002/mbo3.973

PMCID:: PMC7002107

Abstract Article PDF–1.1M

Select item 64993192.

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

Steve Miller, Samia N. Naccache, Erik Samayoa, Kevin Messacar, Shaun Arevalo, Scot Federman, Doug Stryke, Elizabeth Pham, Becky Fung, William J. Bolosky, Danielle Ingebrigtsen, Walter Lorizio, Sandra M. Paff, John A. Leake, Rick Pesano, Roberta DeBiasi, Samuel Dominguez, Charles Y. Chiu

Genome Res. 2019 May; 29(5): 831–842. doi: 10.1101/gr.238170.118

PMCID:: PMC6499319

Abstract Article PDF–3.4M

Select item 63983643.

Rapid Sequencing of Multiple RNA Viruses in Their Native Form

Thidathip Wongsurawat, Piroon Jenjaroenpun, Mariah K. Taylor, Jasper Lee, Aline Lavado Tolardo, Jyothi Parvathareddy, Sangam Kandel, Taylor D. Wadley, Bualan Kaewnapan, Niracha Athipanyasilp, Andrew Skidmore, Donghoon Chung, Chutikarn Chaimayo, Michael Whitt, Wannee Kantakamalakul, Ruengpung Sutthent, Navin Horthongkham, David W. Ussery, Colleen B. Jonsson, Intawat Nookaew

Front Microbiol. 2019; 10: 260. Published online 2019 Feb 25. doi: 10.3389/fmicb.2019.00260

PMCID:: PMC6398364

Abstract Article PDF–1.8M

Select item 62913074.

The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA

Ling Zhu, Sangita Phadtare, Hirofumi Nariya, Ming Ouyang, Robert N. Husson, Masayori Inouye

Mol Microbiol. Author manuscript; available in PMC 2018 Dec 12.

Published in final edited form as: Mol Microbiol. 2008 Aug; 69(3): 559–569. Published online 2008 Jun 28. doi: 10.1111/j.1365-2958.2008.06284.x

PMCID:: PMC6291307

Abstract Article PDF–1.5M

Select item 62066365.

Quality control implementation for universal characterization of DNA and RNA viruses in clinical respiratory samples using single metagenomic next-generation sequencing workflow

A. Bal, M. Pichon, C. Picard, J. S. Casalegno, M. Valette, I. Schuffenecker, L. Billard, S. Vallet, G. Vilchez, V. Cheynet, G. Oriol, S. Trouillet-Assant, Y. Gillet, B. Lina, K. Brengel-Pesce, F. Morfin, L. Josset

BMC Infect Dis. 2018; 18: 537. Published online 2018 Oct 29. doi: 10.1186/s12879-018-3446-5

PMCID:: PMC6206636

Abstract Article PDF–1.2M

Select item 57270096.

Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR)

Adrián Ruiz-Villalba, Elizabeth van Pelt-Verkuil, Quinn D Gunst, Jan M Ruijter, Maurice JB van den Hoff

Biomol Detect Quantif. 2017 Dec; 14: 7–18. Published online 2017 Nov 1. doi: 10.1016/j.bdq.2017.10.001

PMCID:: PMC5727009

Abstract Article PDF–2.6M

Select item 55269727.

Deinococcus radiodurans Toxin–Antitoxin MazEF-dr Mediates Cell Death in Response to DNA Damage Stress

Tao Li, Yulan Weng, Xiaoqiong Ma, Bing Tian, Shang Dai, Ye Jin, Mengjia Liu, Jiulong Li, Jiangliu Yu, Yuejin Hua

Front Microbiol. 2017; 8: 1427. Published online 2017 Jul 26. doi: 10.3389/fmicb.2017.01427

PMCID:: PMC5526972

Abstract Article PDF–2.4M

Select item 54524898.

Multiplexed reverse transcription real-time polymerase chain reaction for simultaneous detection of Mayaro, Oropouche, and Oropouche-like viruses

Felipe Gomes Naveca, Valdinete Alves do Nascimento, Victor Costa de Souza, Bruno Tardelli Diniz Nunes, Daniela Sueli Guerreiro Rodrigues, Pedro Fernando da Costa Vasconcelos

Mem Inst Oswaldo Cruz. 2017 Jul; 112(7): 510–513. doi: 10.1590/0074-02760160062

PMCID:: PMC5452489

Abstract Article PDF–597K

Select item 53123209.

Novel miR-122 delivery system based on MS2 virus like particle surface displaying cell-penetrating peptide TAT for hepatocellular carcinoma

Guojing Wang, Tingting Jia, Xixia Xu, Le Chang, Rui Zhang, Yu Fu, Yulong Li, Xin Yang, Kuo Zhang, Guigao Lin, Yanxi Han, Jinming Li

Oncotarget. 2016 Sep 13; 7(37): 59402–59416. Published online 2016 Jul 18. doi: 10.18632/oncotarget.10681

PMCID:: PMC5312320

Abstract Article PDF–6.4M

Select item 502203210.

Contamination-controlled high-throughput whole genome sequencing for influenza A viruses using the MiSeq sequencer

Hong Kai Lee, Chun Kiat Lee, Julian Wei-Tze Tang, Tze Ping Loh, Evelyn Siew-Chuan Koay

Sci Rep. 2016; 6: 33318. Published online 2016 Sep 14. doi: 10.1038/srep33318

PMCID:: PMC5022032

Abstract Article PDF–1.3M

Select item 480708911.

Hyperexpansion of RNA Bacteriophage Diversity

Siddharth R. Krishnamurthy, Andrew B. Janowski, Guoyan Zhao, Dan Barouch, David Wang

PLoS Biol. 2016 Mar; 14(3): e1002409. Published online 2016 Mar 24. doi: 10.1371/journal.pbio.1002409

PMCID:: PMC4807089

Abstract Article PDF–817K

Select item 479359512.

Mutually-induced Conformational Switching of RNA and Coat Protein Underpins Efficient Assembly of a Viral Capsid

Óttar Rolfsson, Katerina Toropova, Neil A. Ranson, Peter G. Stockley

J Mol Biol. Author manuscript; available in PMC 2016 Mar 16.

Published in final edited form as: J Mol Biol. 2010 Aug 13; 401(2): 309–322. doi: 10.1016/j.jmb.2010.05.058

PMCID:: PMC4793595

Abstract Article PDF–2.3M

Select item 459225813.

Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes

Sarah Temmam, Sonia Monteil-Bouchard, Catherine Robert, Hervé Pascalis, Caroline Michelle, Priscilla Jardot, Rémi Charrel, Didier Raoult, Christelle Desnues

PLoS One. 2015; 10(10): e0139810. Published online 2015 Oct 2. doi: 10.1371/journal.pone.0139810

Expression of Concern in:: PLoS One. 2022; 17(12): e0279054.

PMCID:: PMC4592258

Abstract Article PDF–1.1M

Select item 454226014.

Occurrence of and Sequence Variation among F-Specific RNA Bacteriophage Subgroups in Feces and Wastewater of Urban and Animal Origins

C. Hartard, R. Rivet, S. Banas, C. Gantzer

Appl Environ Microbiol. 2015 Sep; 81(18): 6505–6515. Prepublished online 2015 Jul 10. Published online 2015 Aug 19. doi: 10.1128/AEM.01905-15

PMCID:: PMC4542260

Abstract Article PDF–1001K

Select item 353617115.

Characterization of a mazEF Toxin-Antitoxin Homologue from Staphylococcus equorum

Christopher F. Schuster, Jung-Ho Park, Marcel Prax, Alexander Herbig, Kay Nieselt, Ralf Rosenstein, Masayori Inouye, Ralph Bertram

J Bacteriol. 2013 Jan; 195(1): 115–125. doi: 10.1128/JB.00400-12

PMCID:: PMC3536171

Abstract Article PDF–2.6M

Select item 349981916.

Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages (Family Leviviridae): Evidence for Recombinationin Environmental Strains

Stephanie D. Friedman, Wyatt C. Snellgrove, Fred J. Genthner

Viruses. 2012 Sep; 4(9): 1548–1568. Published online 2012 Sep 13. doi: 10.3390/v4091548

PMCID:: PMC3499819

Abstract Article PDF–934K

Select item 343032417.

Rethinking the Evolution of Single-Stranded RNA (ssRNA) Bacteriophages Based on Genomic Sequences and Characterizations of Two R-Plasmid-Dependent ssRNA Phages, C-1 and Hgal1

Sherin Kannoly, Yongping Shao, Ing-Nang Wang

J Bacteriol. 2012 Sep; 194(18): 5073–5079. doi: 10.1128/JB.00929-12

PMCID:: PMC3430324

Abstract Article PDF–830K

Select item 336692218.

Thermostable DNA Polymerase from a Viral Metagenome Is a Potent RT-PCR Enzyme

Michael J. Moser, Robert A. DiFrancesco, Krishne Gowda, Audrey J. Klingele, Darby R. Sugar, Stacy Stocki, David A. Mead, Thomas W. Schoenfeld

PLoS One. 2012; 7(6): e38371. Published online 2012 Jun 4. doi: 10.1371/journal.pone.0038371

PMCID:: PMC3366922

Abstract Article PDF–1.4M

Select item 324517219.

EcoliWiki: a wiki-based community resource for Escherichia coli

Brenley K. McIntosh, Daniel P. Renfro, Gwendowlyn S. Knapp, Chanchala R. Lairikyengbam, Nathan M. Liles, Lili Niu, Amanda M. Supak, Anand Venkatraman, Adrienne E. Zweifel, Deborah A. Siegele, James C. Hu

Nucleic Acids Res. 2012 Jan; 40(Database issue): D1270–D1277. Published online 2011 Nov 7. doi: 10.1093/nar/gkr880

PMCID:: PMC3245172

Abstract Article PDF–3.9M

Select item 305934420.

Multiplex Reverse Transcription PCR Luminex Assay for Detection and Quantitation of Viral Agents of Gastroenteritis

Jie Liu, Gibson Kibiki, Venance Maro, Athanasia Maro, Happy Kumburu, Ndealilia Swai, Mami Taniuchi, Jean Gratz, Denise Toney, Gagandeep Kang, Eric Houpt

J Clin Virol. Author manuscript; available in PMC 2012 Apr 1.

Published in final edited form as: J Clin Virol. 2011 Apr; 50(4): 308–313. Published online 2011 Jan 21. doi: 10.1016/j.jcv.2010.12.009