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Select item 70389431.

The conserved 3′ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration

Chuan Wang, Yanjie Chao, Gianluca Matera, Qian Gao, Jörg Vogel

Nucleic Acids Res. 2020 Feb 28; 48(4): 2126–2143. Published online 2019 Dec 21. doi: 10.1093/nar/gkz1168

PMCID:: PMC7038943

Abstract Article PDF–8.3M

Select item 69521892.

Role of yoaE Gene Regulated by CpxR in the Survival of Salmonella enterica Serovar Enteritidis in Antibacterial Egg White

Xiaozhen Huang, Mengjun Hu, Xiujuan Zhou, Yanhong Liu, Chunlei Shi, Xianming Shi

mSphere. 2020 Jan-Feb; 5(1): e00638-19. Published online 2020 Jan 8. doi: 10.1128/mSphere.00638-19

PMCID:: PMC6952189

Abstract Article PDF–1.6M

Select item 65855093.

In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification

Yun Wu, Henry K. Lau, Teresa Lee, David K. Lau, Justin Payne

Appl Environ Microbiol. 2019 Apr 1; 85(7): e00165-19. Prepublished online 2019 Feb 1. Published online 2019 Mar 22. doi: 10.1128/AEM.00165-19

PMCID:: PMC6585509

Abstract Article PDF–2.4M

Select item 57752164.

Virulence and Stress Responses of Shigella flexneri Regulated by PhoP/PhoQ

Zhiwei Lin, Xia Cai, Mingliang Chen, Lina Ye, Yang Wu, Xiaofei Wang, Zhihui Lv, Yongpeng Shang, Di Qu

Front Microbiol. 2017; 8: 2689. Published online 2018 Jan 15. doi: 10.3389/fmicb.2017.02689

PMCID:: PMC5775216

Abstract Article PDF–7.5M

Select item 56351715.

Alterations of c‐di‐GMP turnover proteins modulate semi‐constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli

Annika Cimdins, Roger Simm, Fengyang Li, Petra Lüthje, Kaisa Thorell, Åsa Sjöling, Annelie Brauner, Ute Römling

Microbiologyopen. 2017 Oct; 6(5): e00508. Published online 2017 Sep 15. doi: 10.1002/mbo3.508

PMCID:: PMC5635171

Abstract Article PDF–1.2M

Select item 56080166.

Prevalence and virulence gene profiling of enteroaggregative Escherichia coli in malnourished and nourished Brazilian children

Alexandre Havt, Ila FN Lima, Pedro HQS Medeiros, Marco AF Clementino, Ana KS Santos, Marília SMG Amaral, Herlice N. Veras, Mara MG Prata, Noélia L. Lima, Alessandra Di Moura, Álvaro M. Leite, Alberto M. Soares, José Q. Filho, Eric R. Houpt, James P. Nataro, Richard L. Guerrant, Aldo AM Lima

Diagn Microbiol Infect Dis. 2017 Oct; 89(2): 98–105. doi: 10.1016/j.diagmicrobio.2017.06.024

PMCID:: PMC5608016

Abstract Article PDF–440K

Select item 54295697.

Genome sequence of Shigella flexneri strain SP1, a diarrheal isolate that encodes an extended-spectrum β-lactamase (ESBL)

Ping Shen, Jianzhong Fan, Lihua Guo, Jiahua Li, Ang Li, Jing Zhang, Chaoqun Ying, Jinru Ji, Hao Xu, Beiwen Zheng, Yonghong Xiao

Ann Clin Microbiol Antimicrob. 2017; 16: 37. Published online 2017 May 12. doi: 10.1186/s12941-017-0212-2

PMCID:: PMC5429569

Abstract Article PDF–2.9M

Select item 53828108.

Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain

Karl A Dunne, Roy R Chaudhuri, Amanda E Rossiter, Irene Beriotto, Douglas F Browning, Derrick Squire, Adam F Cunningham, Jeffrey A Cole, Nicholas Loman, Ian R Henderson

Microb Genom. 2017 Mar; 3(3): mgen000106. Published online 2017 Mar 23. doi: 10.1099/mgen.0.000106

PMCID:: PMC5382810

Abstract Article PDF–6.3M

Select item 51374179.

The target spectrum of SdsR small RNA in Salmonella

Kathrin S. Fröhlich, Katharina Haneke, Kai Papenfort, Jörg Vogel

Nucleic Acids Res. 2016 Dec 1; 44(21): 10406–10422. Published online 2016 Jul 12. doi: 10.1093/nar/gkw632

PMCID:: PMC5137417

Abstract Article PDF–3.5M

Select item 505415710.

Searching for Non-coding RNAs in Genomic Sequences Using ncRNAscout

Michael Bao, Miguel Cervantes Cervantes, Ling Zhong, Jason T.L. Wang

Genomics Proteomics Bioinformatics. 2012 Apr; 10(2): 114–121. Published online 2012 Jun 8. doi: 10.1016/j.gpb.2012.05.004

PMCID:: PMC5054157

Abstract Article PDF–389K

Select item 504357511.

The outer membrane phospholipase A is essential for membrane integrity and type III secretion in Shigella flexneri

Xia Wang, Feng Jiang, Jianhua Zheng, Lihong Chen, Jie Dong, Lilian Sun, Yafang Zhu, Bo Liu, Jian Yang, Guowei Yang, Qi Jin

Open Biol. 2016 Sep; 6(9): 160073. Published online 2016 Sep 21. doi: 10.1098/rsob.160073

PMCID:: PMC5043575

Abstract Article PDF–1.0M

Select item 478200712.

A Novel Small RNA Regulates Tolerance and Virulence in Shigella flexneri by Responding to Acidic Environmental Changes

Ligui Wang, Guang Yang, Lihua Qi, Xiang Li, Leili Jia, Jing Xie, Shaofu Qiu, Peng Li, RongZhang Hao, Zhihao Wu, Xinying Du, Wuju Li, Hongbin Song

Front Cell Infect Microbiol. 2016; 6: 24. Published online 2016 Mar 8. doi: 10.3389/fcimb.2016.00024

PMCID:: PMC4782007

Abstract Article PDF–2.7M

Select item 473074813.

Complete genome sequence and characterization of avian pathogenic Escherichia coli field isolate ACN001

Xiangru Wang, Liuya Wei, Bin Wang, Ruixuan Zhang, Canying Liu, Dingren Bi, Huanchun Chen, Chen Tan

Stand Genomic Sci. 2016; 11: 13. Published online 2016 Jan 28. doi: 10.1186/s40793-015-0126-6

PMCID:: PMC4730748

Abstract Article PDF–1.3M

Select item 461860414.

Experimental approaches to identify small RNAs and their diverse roles in bacteria – what we have learnt in one decade of MicA research

Sandra Van Puyvelde, Jozef Vanderleyden, Sigrid C J De Keersmaecker

Microbiologyopen. 2015 Oct; 4(5): 699–711. Published online 2015 May 13. doi: 10.1002/mbo3.263

PMCID:: PMC4618604

Abstract Article PDF–1.5M

Select item 460087815.

House dust mites possess a polymorphic, single domain putative peptidoglycan d,l endopeptidase belonging to the NlpC/P60 Superfamily

Vivian H. Tang, Geoffrey A. Stewart, Barbara J. Chang

FEBS Open Bio. 2015; 5: 813–823. Published online 2015 Sep 16. doi: 10.1016/j.fob.2015.09.004

PMCID:: PMC4600878

Abstract Article PDF–2.7M

Select item 453968516.

The evolutionary dynamics of tRNA-gene copy number and codon-use in E. coli.

Michael J. McDonald, Chih-Hung Chou, Krishna BS Swamy, Hsien-Da Huang, Jun-Yi Leu

BMC Evol Biol. 2015; 15: 163. Published online 2015 Aug 19. doi: 10.1186/s12862-015-0441-y

PMCID:: PMC4539685

Abstract Article PDF–1.0M

Select item 452264617.

Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri

Thomas R Connor, Clare R Barker, Kate S Baker, François-Xavier Weill, Kaisar Ali Talukder, Anthony M Smith, Stephen Baker, Malika Gouali, Duy Pham Thanh, Ishrat Jahan Azmi, Wanderley Dias da Silveira, Torsten Semmler, Lothar H Wieler, Claire Jenkins, Alejandro Cravioto, Shah M Faruque, Julian Parkhill, Dong Wook Kim, Karen H Keddy, Nicholas R Thomson

eLife. 2015; 4: e07335. Published online 2015 Aug 4. doi: 10.7554/eLife.07335