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Items: 11

1.
Differential modes of DNA binding by mismatch uracil DNA glycosylase from Escherichia coli: implications for abasic lesion processing and enzyme communication in the base excision repair pathway
Seden Grippon, Qiyuan Zhao, Tom Robinson, Jacqueline J. T. Marshall, Rory J. O’Neill, Hugh Manning, Gordon Kennedy, Christopher Dunsby, Mark Neil, Stephen E. Halford, Paul M. W. French, Geoff S. Baldwin
Nucleic Acids Res. 2011 Apr; 39(7): 2593–2603. Published online 2010 Nov 26. doi: 10.1093/nar/gkq913
PMCID:
PMC3074160
AbstractArticlePDF–2.0M
2.
Identification of Escherichia coli Mismatch-specific Uracil DNA Glycosylase as a Robust Xanthine DNA Glycosylase
Hyun-Wook Lee, Allyn R. Brice, Charles B. Wright, Brian N. Dominy, Weiguo Cao
J Biol Chem. 2010 Dec 31; 285(53): 41483–41490. Published online 2010 Sep 17. doi: 10.1074/jbc.M110.150003
PMCID:
PMC3009874
AbstractArticlePDF–2.4M
3.
Mechanisms of Base Selection by the Escherichia coli Mispaired Uracil Glycosylase
Pingfang Liu, Jacob A. Theruvathu, Agus Darwanto, Victoria Valinluck Lao, Tod Pascal, William Goddard, III, Lawrence C. Sowers
J Biol Chem. 2008 Apr 4; 283(14): 8829–8836. doi: 10.1074/jbc.M707174200
PMCID:
PMC2276368
AbstractArticlePDF–366K
4.
Crystal structure of a thwarted mismatch glycosylase DNA repair complex.
T E Barrett, O D Schärer, R Savva, T Brown, J Jiricny, G L Verdine, L H Pearl
EMBO J. 1999 Dec 1; 18(23): 6599–6609. doi: 10.1093/emboj/18.23.6599
PMCID:
PMC1171723
SummaryPDF–1.7M
5.
7,8-dihydro-8-oxoadenine, a highly mutagenic adduct, is repaired by Escherichia coli and human mismatch-specific uracil/thymine-DNA glycosylases
Ibtissam Talhaoui, Sophie Couvé, Alexander A. Ishchenko, Christophe Kunz, Primo Schär, Murat Saparbaev
Nucleic Acids Res. 2013 Jan; 41(2): 912–923. Published online 2012 Dec 2. doi: 10.1093/nar/gks1149
PMCID:
PMC3553953
AbstractArticlePDF–4.4M
6.
The nucleotide sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E coli K12.
Z Burton, R R Burgess, J Lin, D Moore, S Holder, C A Gross
Nucleic Acids Res. 1981 Jun 25; 9(12): 2889–2903. doi: 10.1093/nar/9.12.2889
PMCID:
PMC326900
SummaryPage BrowsePDF–1.1M
7.
3,N4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase
Murat Saparbaev, Jacques Laval
Proc Natl Acad Sci U S A. 1998 Jul 21; 95(15): 8508–8513. doi: 10.1073/pnas.95.15.8508
PMCID:
PMC21106
AbstractArticlePDF–241K
8.
Quantitative determination of uracil residues in Escherichia coli DNA: Contribution of ung, dug, and dut genes to uracil avoidance
Sibghat-Ullah Lari, Cheng-Yao Chen, Béata G. Vertéssy, Jeff Morré, Samuel E. Bennett
DNA Repair (Amst) Author manuscript; available in PMC 2011 Feb 16.
Published in final edited form as: DNA Repair (Amst). 2006 Dec 9; 5(12): 1407–1420. Published online 2006 Aug 14. doi: 10.1016/j.dnarep.2006.06.009
PMCID:
PMC3040120
AbstractArticlePDF–2.3M
9.
Detection of new genes in a bacterial genome using Markov models for three gene classes.
M Borodovsky, J D McIninch, E V Koonin, K E Rudd, C Médigue, A Danchin
Nucleic Acids Res. 1995 Sep 11; 23(17): 3554–3562. doi: 10.1093/nar/23.17.3554
PMCID:
PMC307237
SummaryPage BrowsePDF–1.6M
10.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
11.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K

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