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Items: 1 to 20 of 33

1.
A Mutant of Uracil DNA Glycosylase That Distinguishes between Cytosine and 5-Methylcytosine
Scott T. Kimber, Tom Brown, Keith R. Fox
PLoS One. 2014; 9(4): e95394. Published online 2014 Apr 16. doi: 10.1371/journal.pone.0095394
PMCID:
PMC3989344
AbstractArticlePDF–633K
2.
Mechanism of translocation of uracil-DNA glycosylase from Escherichia coli between distributed lesions
Grigory V. Mechetin, Dmitry O. Zharkov
Biochem Biophys Res Commun. Author manuscript; available in PMC 2012 Oct 22.
Published in final edited form as: Biochem Biophys Res Commun. 2011 Oct 22; 414(2): 425–430. Published online 2011 Sep 28. doi: 10.1016/j.bbrc.2011.09.106
PMCID:
PMC3249333
AbstractArticlePDF–600K
3.
Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli
Sanjay Kumar Bharti, Umesh Varshney
Nucleic Acids Res. 2010 Apr; 38(7): 2291–2301. Published online 2010 Jan 7. doi: 10.1093/nar/gkp1210
PMCID:
PMC2853124
AbstractArticlePDF–847K
4.
Uracil DNA Glycosylase: Revisiting Substrate-Assisted Catalysis by DNA Phosphate Anions
Jared B. Parker, James T. Stivers
Biochemistry. Author manuscript; available in PMC 2009 Aug 20.
Published in final edited form as: Biochemistry. 2008 Aug 19; 47(33): 8614–8622. Published online 2008 Jul 25. doi: 10.1021/bi800854g
PMCID:
PMC2729715
AbstractArticlePDF–1.2M
5.
Competitive Inhibition of Uracil DNA Glycosylase by a Modified Nucleotide Whose Triphosphate is a Substrate for DNA Polymerase
Haidong Huang, James T. Stivers, Marc M. Greenberg
J Am Chem Soc. Author manuscript; available in PMC 2010 Feb 4.
Published in final edited form as: J Am Chem Soc. 2009 Feb 4; 131(4): 1344–1345. doi: 10.1021/ja807705z
PMCID:
PMC2635492
AbstractArticlePDF–708K
6.
An N-Glycosidase from Escherichia coli That Releases Free Uracil from DNA Containing Deaminated Cytosine Residues
Tomas Lindahl
Proc Natl Acad Sci U S A. 1974 Sep; 71(9): 3649–3653. doi: 10.1073/pnas.71.9.3649
PMCID:
PMC433833
SummaryPage BrowsePDF–1.0M
7.
Release of 5'-terminal deoxyribose-phosphate residues from incised abasic sites in DNA by the Escherichia coli RecJ protein.
G Dianov, B Sedgwick, G Daly, M Olsson, S Lovett, T Lindahl
Nucleic Acids Res. 1994 Mar 25; 22(6): 993–998. doi: 10.1093/nar/22.6.993
PMCID:
PMC307920
SummaryPage BrowsePDF–1.2M
8.
Endonuclease IV of Escherichia coli is induced by paraquat.
E Chan, B Weiss
Proc Natl Acad Sci U S A. 1987 May; 84(10): 3189–3193. doi: 10.1073/pnas.84.10.3189
PMCID:
PMC304834
SummaryPage BrowsePDF–1.0M
9.
Substitutions at tyrosine 66 of Escherichia coli uracil DNA glycosylase lead to characterization of an efficient enzyme that is recalcitrant to product inhibition
Narottam Acharya, Ramappa K. Talawar, K. Saikrishnan, M. Vijayan, Umesh Varshney
Nucleic Acids Res. 2003 Dec 15; 31(24): 7216–7226. doi: 10.1093/nar/gkg918
PMCID:
PMC291862
AbstractArticlePDF–437K
10.
Role of exonuclease III in the base excision repair of uracil-containing DNA.
A F Taylor, B Weiss
J Bacteriol. 1982 Jul; 151(1): 351–357. doi: 10.1128/jb.151.1.351-357.1982
PMCID:
PMC220247
SummaryPage BrowsePDF–1.0M
11.
X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG.
R Ravishankar, M Bidya Sagar, S Roy, K Purnapatre, P Handa, U Varshney, M Vijayan
Nucleic Acids Res. 1998 Nov 1; 26(21): 4880–4887. doi: 10.1093/nar/26.21.4880
PMCID:
PMC147935
SummaryPDF–242K
12.
The post-incision steps of the DNA base excision repair pathway in Escherichia coli: studies with a closed circular DNA substrate containing a single U:G base pair.
M Sandigursky, G A Freyer, W A Franklin
Nucleic Acids Res. 1998 Mar 1; 26(5): 1282–1287. doi: 10.1093/nar/26.5.1282
PMCID:
PMC147386
SummaryPDF–268K
13.
Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: evidence for the occurrence of long-range interactions between the enzyme and substrate
Priya Handa, Narottam Acharya, Umesh Varshney
Nucleic Acids Res. 2002 Jul 15; 30(14): 3086–3095. doi: 10.1093/nar/gkf425
PMCID:
PMC135746
AbstractArticlePDF–444K
14.
Structural basis for uracil DNA glycosylase interaction with uracil: NMR study
Mahua Ghosh, N. Vinay Kumar, Umesh Varshney, K. V. R. Chary
Nucleic Acids Res. 2000 May 1; 28(9): 1906–1912. doi: 10.1093/nar/28.9.1906
PMCID:
PMC103296
AbstractArticlePDF–391K
15.
Enzymatic Capture of a Transient Extrahelical Thymine in the Search for Uracil in DNA
Jared B. Parker, Mario A. Bianchet, Daniel J. Krosky, Joshua I. Friedman, L. Mario Amzel, James T. Stivers
Nature. Author manuscript; available in PMC 2009 Sep 29.
Published in final edited form as: Nature. 2007 Sep 27; 449(7161): 433–437. Published online 2007 Aug 19. doi: 10.1038/nature06131
PMCID:
PMC2754044
AbstractArticlePDF–2.4M
16.
DNA deoxyribophosphodiesterase of Escherichia coli is associated with exonuclease I.
M Sandigursky, W A Franklin
Nucleic Acids Res. 1992 Sep 25; 20(18): 4699–4703. doi: 10.1093/nar/20.18.4699
PMCID:
PMC334219
SummaryPage BrowsePDF–902K
17.
Repair of chromosomal abasic sites in vivo involves at least three different repair pathways
Marit Otterlei, Bodil Kavli, Rune Standal, Camilla Skjelbred, Sangeeta Bharati, Hans Einar Krokan
EMBO J. 2000 Oct 16; 19(20): 5542–5551. doi: 10.1093/emboj/19.20.5542
PMCID:
PMC314018
AbstractArticlePDF–172K
18.
3,N4-ethenocytosine, a highly mutagenic adduct, is a primary substrate for Escherichia coli double-stranded uracil-DNA glycosylase and human mismatch-specific thymine-DNA glycosylase
Murat Saparbaev, Jacques Laval
Proc Natl Acad Sci U S A. 1998 Jul 21; 95(15): 8508–8513. doi: 10.1073/pnas.95.15.8508
PMCID:
PMC21106
AbstractArticlePDF–241K
19.
Quantitative determination of uracil residues in Escherichia coli DNA: Contribution of ung, dug, and dut genes to uracil avoidance
Sibghat-Ullah Lari, Cheng-Yao Chen, Béata G. Vertéssy, Jeff Morré, Samuel E. Bennett
DNA Repair (Amst) Author manuscript; available in PMC 2011 Feb 16.
Published in final edited form as: DNA Repair (Amst). 2006 Dec 9; 5(12): 1407–1420. Published online 2006 Aug 14. doi: 10.1016/j.dnarep.2006.06.009
PMCID:
PMC3040120
AbstractArticlePDF–2.3M
20.
Repair of clustered uracil DNA damages in Escherichia coli
Dwain I. D’souza, Lynn Harrison
Nucleic Acids Res. 2003 Aug 1; 31(15): 4573–4581. doi: 10.1093/nar/gkg493
PMCID:
PMC169883
AbstractArticlePDF–199K

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