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Select item 1392101.

Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method

Klaus Hartmuth, Henning Urlaub, Hans-Peter Vornlocher, Cindy L. Will, Marc Gentzel, Matthias Wilm, Reinhard Lührmann

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16719–16724. Published online 2002 Dec 11. doi: 10.1073/pnas.262483899

PMCID:: PMC139210

Abstract Article PDF–255K

Select item 110274132.

RBM22 regulates RNA polymerase II 5′ pausing, elongation rate, and termination by coordinating 7SK-P-TEFb complex and SPT5

Xian Du, Wenying Qin, Chunyu Yang, Lin Dai, Mingkui San, Yingdan Xia, Siyu Zhou, Mengyang Wang, Shuang Wu, Shaorui Zhang, Huiting Zhou, Fangshu Li, Fang He, Jingfeng Tang, Jia-Yu Chen, Yu Zhou, Rui Xiao

Genome Biol. 2024; 25: 102. Published online 2024 Apr 19. doi: 10.1186/s13059-024-03242-6

PMCID:: PMC11027413

Abstract Article PDF–3.8M

Select item 33211753.

Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre

Nicolas Rasche, Olexandr Dybkov, Jana Schmitzová, Berktan Akyildiz, Patrizia Fabrizio, Reinhard Lührmann

EMBO J. 2012 Mar 21; 31(6): 1591–1604. Published online 2012 Jan 13. doi: 10.1038/emboj.2011.502

PMCID:: PMC3321175

Abstract Article PDF–1.7M

Select item 88003894.

Mutations in spliceosomal genes PPIL1 and PRP17 cause neurodegenerative pontocerebellar hypoplasia with microcephaly

Guoliang Chai, Alice Webb, Chen Li, Danny Antaki, Sangmoon Lee, Martin W. Breuss, Nhi Lang, Valentina Stanley, Paula Anzenberg, Xiaoxu Yang, Trevor Marshall, Patrick Gaffney, Klaas J. Wierenga, Brian Hon-Yin Chung, Mandy Ho-Yin Tsang, Lynn S. Pais, Alysia Kern Lovgren, Grace E. VanNoy, Heidi L. Rehm, Ghayda Mirzaa, Eyby Leon, Jullianne Diaz, Alexander Neumann, Arnout P. Kalverda, Iain W. Manfield, David A. Parry, Clare V. Logan, Colin A. Johnson, David T. Bonthron, Elizabeth MA Valleley, Mahmoud Y. Issa, Sherif F. AbdelGhafar, Mohamed S. Abdel-Hamid, Patricia Jennings, Maha S. Zaki, Eamonn Sheridan, Joseph G. Gleeson

Neuron. Author manuscript; available in PMC 2022 Jan 29.

Published in final edited form as: Neuron. 2021 Jan 20; 109(2): 241–256.e9. Published online 2020 Nov 20. doi: 10.1016/j.neuron.2020.10.035

PMCID:: PMC8800389

Abstract Article PDF–2.7M

Select item 59580995.

DNAJC17 is localized in nuclear speckles and interacts with splicing machinery components

A. Pascarella, G. Ferrandino, S. C. Credendino, C. Moccia, F. D’Angelo, B. Miranda, C. D’Ambrosio, P. Bielli, O. Spadaro, M. Ceccarelli, A. Scaloni, C. Sette, M. De Felice, G. De Vita, E. Amendola

Sci Rep. 2018; 8: 7794. Published online 2018 May 17. doi: 10.1038/s41598-018-26093-1

PMCID:: PMC5958099

Abstract Article PDF–2.0M

Select item 48171646.

Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131

Radhika A. Varier, Enrique Carrillo de Santa Pau, Petra van der Groep, Rik G. H. Lindeboom, Filomena Matarese, Anneloes Mensinga, Arne H. Smits, Raghu Ram Edupuganti, Marijke P. Baltissen, Pascal W. T. C. Jansen, Natalie ter Hoeve, Danny R. van Weely, Ina Poser, Paul J. van Diest, Hendrik G. Stunnenberg, Michiel Vermeulen

J Biol Chem. 2016 Apr 1; 291(14): 7313–7324. Published online 2016 Feb 3. doi: 10.1074/jbc.M115.701227

PMCID:: PMC4817164

Abstract Article PDF–3.5M

Select item 91536927.

KSHV episome tethering sites on host chromosomes and regulation of latency-lytic switch by CHD4

Ashish Kumar, Yuanzhi Lyu, Yuichi Yanagihashi, Chanikarn Chantarasrivong, Vladimir Majerciak, Michelle Salemi, Kang-Hsin Wang, Tomoki Inagaki, Frank Chuang, Ryan R. Davis, Clifford G. Tepper, Kazushi Nakano, Chie Izumiya, Michiko Shimoda, Ken-ichi Nakajima, Alexander Merleev, Zhi-Ming Zheng, Mel Campbell, Yoshihiro Izumiya

Cell Rep. Author manuscript; available in PMC 2022 May 31.

Published in final edited form as: Cell Rep. 2022 May 10; 39(6): 110788. doi: 10.1016/j.celrep.2022.110788

PMCID:: PMC9153692

Abstract Article PDF–3.0M

Select item 66675008.

A protein-RNA interaction atlas of the ribosome biogenesis factor AATF

Rainer W. J. Kaiser, Michael Ignarski, Eric L. Van Nostrand, Christian K. Frese, Manaswita Jain, Sadrija Cukoski, Heide Heinen, Melanie Schaechter, Lisa Seufert, Konstantin Bunte, Peter Frommolt, Patrick Keller, Mark Helm, Katrin Bohl, Martin Höhne, Bernhard Schermer, Thomas Benzing, Katja Höpker, Christoph Dieterich, Gene W. Yeo, Roman-Ulrich Müller, Francesca Fabretti

Sci Rep. 2019; 9: 11071. Published online 2019 Jul 30. doi: 10.1038/s41598-019-47552-3

PMCID:: PMC6667500

Abstract Article PDF–2.8M

Select item 13702669.

Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.

Melissa S Jurica, Lawrence J Licklider, Steven R Gygi, Nikolaus Grigorieff, Melissa J Moore

RNA. 2002 Apr; 8(4): 426–439. doi: 10.1017/s1355838202021088

PMCID:: PMC1370266

Summary PDF–11M

Select item 352217310.

The Cellular EJC Interactome Reveals Higher Order mRNP Structure and an EJC-SR Protein Nexus

Guramrit Singh, Alper Kucukural, Can Cenik, John D. Leszyk, Scott A. Shaffer, Zhiping Weng, Melissa J. Moore

Cell. Author manuscript; available in PMC 2013 May 9.

Published in final edited form as: Cell. 2012 Nov 9; 151(4): 750–764. Published online 2012 Oct 18. doi: 10.1016/j.cell.2012.10.007

PMCID:: PMC3522173

Abstract Article PDF–4.2M

Select item 562937211.

RECQ1 helicase is involved in replication stress survival and drug resistance in multiple myeloma

E Viziteu, B Klein, J Basbous, Y-L Lin, C Hirtz, C Gourzones, L Tiers, A Bruyer, L Vincent, C Grandmougin, A Seckinger, H Goldschmidt, A Constantinou, P Pasero, D Hose, J Moreaux

Leukemia. 2017 Oct; 31(10): 2104–2113. Prepublished online 2017 Feb 10. Published online 2017 Mar 10. doi: 10.1038/leu.2017.54

PMCID:: PMC5629372

Abstract Article PDF–2.9M

Select item 630048712.

Delineating WWOX Protein Interactome by Tandem Affinity Purification-Mass Spectrometry: Identification of Top Interactors and Key Metabolic Pathways Involved

Tabish Hussain, Jaeho Lee, Martin C. Abba, Junjie Chen, C. Marcelo Aldaz

Front Oncol. 2018; 8: 591. Published online 2018 Dec 13. doi: 10.3389/fonc.2018.00591

PMCID:: PMC6300487

Abstract Article PDF–1.8M

Select item 1024311613.

Comprehensive Interactome Mapping of the DNA Repair Scaffold SLX4 Using Proximity Labeling and Affinity Purification

Camila M. Aprosoff, Boris J.A. Dyakov, Vivian H.W. Cheung, Cassandra J. Wong, Mikaela Palandra, Anne-Claude Gingras, Haley D.M. Wyatt

J Proteome Res. 2023 Jun 2; 22(6): 1660–1681. Published online 2023 Apr 18. doi: 10.1021/acs.jproteome.2c00706

PMCID:: PMC10243116

Abstract Article PDF–13M

Select item 631799414.

SNIP1 Recruits TET2 to Regulate c-MYC Target Genes and Cellular DNA Damage Response

Lei-Lei Chen, Huai-Peng Lin, Wen-Jie Zhou, Chen-Xi He, Zhi-Yong Zhang, Zhou-Li Cheng, Jun-Bin Song, Peng Liu, Xin-Yu Chen, Yu-Kun Xia, Xiu-Fei Chen, Ren-Qiang Sun, Jing-Ye Zhang, Yi-Ping Sun, Lei Song, Bing-Jie Liu, Rui-Kai Du, Chen Ding, Fei Lan, Sheng-Lin Huang, Feng Zhou, Suling Liu, Yue Xiong, Dan Ye, Kun-Liang Guan

Cell Rep. Author manuscript; available in PMC 2019 Jan 3.

Published in final edited form as: Cell Rep. 2018 Nov 6; 25(6): 1485–1500.e4. doi: 10.1016/j.celrep.2018.10.028

PMCID:: PMC6317994

Abstract Article PDF–1.4M

Select item 396431015.

The functional interactome landscape of the human histone deacetylase family

Preeti Joshi, Todd M Greco, Amanda J Guise, Yang Luo, Fang Yu, Alexey I Nesvizhskii, Ileana M Cristea

Mol Syst Biol. 2013; 9: 672. Published online 2013 Jun 11. doi: 10.1038/msb.2013.26

PMCID:: PMC3964310

Abstract Article PDF–5.2M

Select item 584953416.

Genome-wide CRISPR-Cas9 screen identifies leukemia-specific dependence on a pre-mRNA metabolic pathway regulated by DCPS

Takuji Yamauchi, Takeshi Masuda, Matthew C. Canver, Michael Seiler, Yuichiro Semba, Mohammad Shboul, Mohammed Al-Raqad, Manami Maeda, Vivien A. C. Schoonenberg, Mitchel A. Cole, Claudio Macias-Trevino, Yuichi Ishikawa, Qiuming Yao, Michitaka Nakano, Fumio Arai, Stuart H. Orkin, Bruno Reversade, Silvia Buonamici, Luca Pinello, Koichi Akashi, Daniel E. Bauer, Takahiro Maeda

Cancer Cell. Author manuscript; available in PMC 2019 Mar 12.

Published in final edited form as: Cancer Cell. 2018 Mar 12; 33(3): 386–400.e5. Published online 2018 Feb 22. doi: 10.1016/j.ccell.2018.01.012

PMCID:: PMC5849534

Abstract Article PDF–1.1M

Select item 760600817.

BCAR1 promotes proliferation and cell growth in lung adenocarcinoma via upregulation of POLR2A

Chun‐guo Mao, Sha‐sha Jiang, Cheng Shen, Tan Long, Hua Jin, Qun‐You Tan, Bo Deng

Thorac Cancer. 2020 Nov; 11(11): 3326–3336. Published online 2020 Oct 1. doi: 10.1111/1759-7714.13676

PMCID:: PMC7606008

Abstract Article PDF–2.5M

Select item 860245118.

Identification of proximal SUMO-dependent interactors using SUMO-ID

Orhi Barroso-Gomila, Fredrik Trulsson, Veronica Muratore, Iñigo Canosa, Laura Merino-Cacho, Ana Rosa Cortazar, Coralia Pérez, Mikel Azkargorta, Ibon Iloro, Arkaitz Carracedo, Ana M. Aransay, Felix Elortza, Ugo Mayor, Alfred C. O. Vertegaal, Rosa Barrio, James D. Sutherland

Nat Commun. 2021; 12: 6671. Published online 2021 Nov 18. doi: 10.1038/s41467-021-26807-6

PMCID:: PMC8602451

Abstract Article PDF–11M

Select item 642645519.

Mapping the genetic landscape of human cells

Max A. Horlbeck, Albert Xu, Min Wang, Neal K. Bennett, Chong Y. Park, Derek Bogdanoff, Britt Adamson, Eric D. Chow, Martin Kampmann, Tim R. Peterson, Ken Nakamura, Michael A. Fischbach, Jonathan S. Weissman, Luke A. Gilbert

Cell. Author manuscript; available in PMC 2019 Aug 9.

Published in final edited form as: Cell. 2018 Aug 9; 174(4): 953–967.e22. Published online 2018 Jul 19. doi: 10.1016/j.cell.2018.06.010

PMCID:: PMC6426455

Abstract Article PDF–3.6M

Select item 729072120.

Comparative Application of BioID and TurboID for Protein-Proximity Biotinylation

Danielle G. May, Kelsey L. Scott, Alexandre R. Campos, Kyle J. Roux

Cells. 2020 May; 9(5): 1070. Published online 2020 Apr 25. doi: 10.3390/cells9051070

PMCID:: PMC7290721

Abstract Article PDF–9.2M

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