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Items: 1 to 20 of 323

1.
How subtle changes in 3D structure can create large changes in transcription
Jordan Yupeng Xiao, Antonina Hafner, Alistair N Boettiger
eLife. 2021; 10: e64320. Published online 2021 Jul 9. doi: 10.7554/eLife.64320
PMCID:
PMC8352591
AbstractArticlePDF–1.3M
2.
Minimizing off-target signals in RNA fluorescent in situ hybridization
Aaron Arvey, Anita Hermann, Cheryl C. Hsia, Eugene Ie, Yoav Freund, William McGinnis
Nucleic Acids Res. 2010 Jun; 38(10): e115. Published online 2010 Feb 17. doi: 10.1093/nar/gkq042
PMCID:
PMC2879521
AbstractArticlePDF–5.8M
3.
A novel promoter-tethering element regulates enhancer-driven gene expression at the bithorax complex in the Drosophila embryo
Omar S. Akbari, Esther Bae, Holly Johnsen, Alfred Villaluz, Debbie Wong, Robert A. Drewell
Development. Author manuscript; available in PMC 2008 Jul 1.
Published in final edited form as: Development. 2008 Jan; 135(1): 123–131. Published online 2007 Nov 28. doi: 10.1242/dev.010744
PMCID:
PMC2205987
AbstractArticlePDF–1.3M
4.
The anterobithorax and bithorax mutations of the bithorax complex.
M Peifer, W Bender
EMBO J. 1986 Sep; 5(9): 2293–2303. doi: 10.1002/j.1460-2075.1986.tb04497.x
PMCID:
PMC1167113
SummaryPage BrowsePDF–2.7M
5.
Characterization of two RNAs transcribed from the cis-regulatory region of the abd-A domain within the Drosophila bithorax complex.
S Cumberledge, A Zaratzian, S Sakonju
Proc Natl Acad Sci U S A. 1990 May; 87(9): 3259–3263. doi: 10.1073/pnas.87.9.3259
PMCID:
PMC53879
SummaryPage BrowsePDF–1.5M
6.
Fluorescent labeling of genomic loci in Drosophila imaginal discs with heterologous DNA-binding proteins
Rebecca K. Delker, Ross H. Munce, Michelle Hu, Richard S. Mann
Cell Rep Methods. 2022 Mar 28; 2(3): 100175. Published online 2022 Mar 9. doi: 10.1016/j.crmeth.2022.100175
PMCID:
PMC9017127
AbstractArticlePDF–6.6M
7.
In-Depth Annotation of the Drosophila Bithorax-Complex Reveals the Presence of Several Alternative ORFs That Could Encode for Motif-Rich Peptides
Magali Naville, Samir Merabet
Cells. 2021 Nov; 10(11): 2983. Published online 2021 Nov 2. doi: 10.3390/cells10112983
PMCID:
PMC8616405
AbstractArticlePDF–3.2M
8.
Deep learning connects DNA traces to transcription to reveal predictive features beyond enhancer–promoter contact
Aparna R. Rajpurkar, Leslie J. Mateo, Sedona E. Murphy, Alistair N. Boettiger
Nat Commun. 2021; 12: 3423. Published online 2021 Jun 8. doi: 10.1038/s41467-021-23831-4
PMCID:
PMC8187657
AbstractArticlePDF–4.1M
9.
THE BOUNDARY PARADOX IN THE BITHORAX COMPLEX
Olga Kyrchanova, Vladic Mogila, Daniel Wolle, Jose Paolo Magbanua, Robert White, Pavel Georgiev, Paul Schedl
Mech Dev. Author manuscript; available in PMC 2016 Nov 1.
Published in final edited form as: Mech Dev. 2015 Nov; 138(Pt 2): 122–132. Published online 2015 Jul 26. doi: 10.1016/j.mod.2015.07.002
PMCID:
PMC4890074
AbstractArticlePDF–1.3M
10.
The open for business model of the bithorax complex in Drosophila
Robert K. Maeda, François Karch
Chromosoma. 2015; 124(3): 293–307. Published online 2015 Jun 12. doi: 10.1007/s00412-015-0522-0
PMCID:
PMC4548009
AbstractArticlePDF–2.0M
11.
Transcription Factor Binding Site Redundancy in Embryonic Enhancers of the Drosophila Bithorax Complex
Robert A. Drewell
G3 (Bethesda) 2011 Dec; 1(7): 603–606. Published online 2011 Dec 1. doi: 10.1534/g3.111.001404
PMCID:
PMC3276168
AbstractArticlePDF–875K
12.
The Abdominal-B Promoter Tethering Element Mediates Promoter-Enhancer Specificity at the Drosophila Bithorax Complex
Omar S. Akbari, Ben J. Schiller, Sara E. Goetz, Margaret C.W. Ho, Esther Bae, Robert A. Drewell
Fly (Austin) Author manuscript; available in PMC 2008 May 23.
Published in final edited form as: Fly (Austin). 2007 Dec; 1(6): 337–339. doi: 10.4161/fly.5607
PMCID:
PMC2394718
AbstractArticlePDF–556K
13.
Genetic Analysis of Transvection Effects Involving Cis-Regulatory Elements of the Drosophila Ultrabithorax Gene
J. L. Micol, J. E. Castelli-Gair, A. Garcia-Bellido
Genetics. 1990 Oct; 126(2): 365–373. doi: 10.1093/genetics/126.2.365
PMCID:
PMC1204191
SummaryPDF–3.0M
14.
Transvection in the Ultrabithorax Domain of the Bithorax Complex of Drosophila Melanogaster
D. Mathog
Genetics. 1990 Jun; 125(2): 371–382. doi: 10.1093/genetics/125.2.371
PMCID:
PMC1204026
SummaryPDF–1.2M
15.
The molecular genetics of the bithorax complex of Drosophila: cis-regulation in the Abdominal-B domain.
S E Celniker, S Sharma, D J Keelan, E B Lewis
EMBO J. 1990 Dec; 9(13): 4277–4286. doi: 10.1002/j.1460-2075.1990.tb07876.x
PMCID:
PMC552210
SummaryPage BrowsePDF–3.0M
16.
Regulatory elements of the bithorax complex that control expression along the anterior-posterior axis.
J Simon, M Peifer, W Bender, M O'Connor
EMBO J. 1990 Dec; 9(12): 3945–3956. doi: 10.1002/j.1460-2075.1990.tb07615.x
PMCID:
PMC552165
SummaryPage BrowsePDF–3.7M
17.
The structure and expression of a hybrid homeotic gene
Annie Rowe, Michael Akam
EMBO J. 1988 Apr; 7(4): 1107–1114. doi: 10.1002/j.1460-2075.1988.tb02919.x
PMCID:
PMC454444
SummaryPage BrowsePDF–2.2M
18.
Cell-type-specific mechanisms of transcriptional repression by the homeotic gene products UBX and ABD-A in Drosophila embryos.
B Appel, S Sakonju
EMBO J. 1993 Mar; 12(3): 1099–1109. doi: 10.1002/j.1460-2075.1993.tb05751.x
PMCID:
PMC413311
SummaryPage BrowsePDF–2.8M
19.
A differential response element for the homeotics at the Antennapedia P1 promoter of Drosophila.
E E Saffman, M A Krasnow
Proc Natl Acad Sci U S A. 1994 Aug 2; 91(16): 7420–7424. doi: 10.1073/pnas.91.16.7420
PMCID:
PMC44412
SummaryPage BrowsePDF–1.4M
20.
Fragments of the Fab-3 and Fab-4 Boundaries of the Drosophila melanogaster Bithorax Complex That Include CTCF Sites Are not Effective Insulators
O. V. Kyrchanova, N. Y. Postika, V. V. Sokolov, P. G. Georgiev
Dokl Biochem Biophys. 2022; 502(1): 21–24. Published online 2022 Mar 11. doi: 10.1134/S1607672922010069
PMCID:
PMC8917101
AbstractArticlePDF–693K

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