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Items: 1 to 20 of 32

1.
Dynamics of substrate processing by PPIP5K2, a versatile catalytic machine
Yi An, Henning J. Jessen, Huanchen Wang, Stephen B. Shears, Dmitri Kireev
Structure. Author manuscript; available in PMC 2020 Jun 4.
Published in final edited form as: Structure. 2019 Jun 4; 27(6): 1022–1028.e2. Published online 2019 Apr 4. doi: 10.1016/j.str.2019.03.007
PMCID:
PMC6551306
AbstractArticlePDF–838K
2.
Identification of a functional nuclear translocation sequence in hPPIP5K2
Sheila T. Yong, Hoai-Nghia Nguyen, Jae H. Choi, Carl D. Bortner, Jason Williams, Niyas K. Pulloor, Manoj N. Krishnan, Stephen B. Shears
BMC Cell Biol. 2015; 16: 17. Published online 2015 Jun 18. doi: 10.1186/s12860-015-0063-7
PMCID:
PMC4472268
AbstractArticlePDF–1.2M
3.
The kinetic properties of a human PPIP5K reveal that its kinase activities are protected against the consequences of a deteriorating cellular bioenergetic environment
Jeremy D. Weaver, Huanchen Wang, Stephen B. Shears
Biosci Rep. 2013; 33(2): e00022. Prepublished online 2012 Dec 14. Published online 2013 Feb 5. doi: 10.1042/BSR20120115
PMCID:
PMC3564036
AbstractArticlePDF–1.2M
4.
Mutations in Diphosphoinositol-Pentakisphosphate Kinase PPIP5K2 are associated with hearing loss in human and mouse
Rizwan Yousaf, Chunfang Gu, Zubair M. Ahmed, Shaheen N. Khan, Thomas B. Friedman, Sheikh Riazuddin, Stephen B. Shears, Saima Riazuddin
PLoS Genet. 2018 Mar; 14(3): e1007297. Published online 2018 Mar 28. doi: 10.1371/journal.pgen.1007297
PMCID:
PMC5891075
AbstractArticlePDF–9.4M
5.
The Significance of the Bifunctional Kinase/Phosphatase Activities of Diphosphoinositol Pentakisphosphate Kinases (PPIP5Ks) for Coupling Inositol Pyrophosphate Cell Signaling to Cellular Phosphate Homeostasis
Chunfang Gu, Hoai-Nghia Nguyen, Alexandre Hofer, Henning J. Jessen, Xuming Dai, Huanchen Wang, Stephen B. Shears
J Biol Chem. 2017 Mar 17; 292(11): 4544–4555. Published online 2017 Jan 26. doi: 10.1074/jbc.M116.765743
PMCID:
PMC5377771
AbstractArticlePDF–2.0M
6.
Structural basis for an inositol pyrophosphate kinase surmounting phosphate crowding
Huanchen Wang, J R Falck, Traci M Tanaka Hall, Stephen B Shears
Nat Chem Biol. Author manuscript; available in PMC 2014 Feb 13.
Published in final edited form as: Nat Chem Biol. 2011 Nov 27; 8(1): 111–116. Published online 2011 Nov 27. doi: 10.1038/nchembio.733
PMCID:
PMC3923263
AbstractArticlePDF–3.1M
7.
Structural Analysis and Detection of Biological Inositol Pyrophosphates Reveal That the Family of VIP/Diphosphoinositol Pentakisphosphate Kinases Are 1/3-Kinases
Hongying Lin, Peter C. Fridy, Anthony A. Ribeiro, Jae H. Choi, Deb K. Barma, Günter Vogel, J. R. Falck, Stephen B. Shears, John D. York, Georg W. Mayr
J Biol Chem. 2009 Jan 16; 284(3): 1863–1872. doi: 10.1074/jbc.M805686200
PMCID:
PMC2615522
AbstractArticlePDF–1.0M
8.
Purification, Sequencing, and Molecular Identification of a Mammalian PP-InsP5 Kinase That Is Activated When Cells Are Exposed to Hyperosmotic Stress
Jae H. Choi, Jason Williams, Jaiesoon Cho, J. R. Falck, Stephen B. Shears
J Biol Chem. Author manuscript; available in PMC 2008 Oct 19.
Published in final edited form as: J Biol Chem. 2007 Oct 19; 282(42): 30763–30775. Published online 2007 Aug 16. doi: 10.1074/jbc.M704655200
PMCID:
PMC2366029
AbstractArticlePDF–1.3M
9.
Whole exome sequencing in extended families with autism spectrum disorder implicates four candidate genes
Nicola H. Chapman, Alejandro Q. Nato, Jr., Raphael Bernier, Katy Ankeman, Harkirat Sohi, Jeff Munson, Ashok Patowary, Marilyn Archer, Elizabeth M. Blue, Sara Jane Webb, Hilary Coon, Wendy H. Raskind, Zoran Brkanac, Ellen M. Wijsman
Hum Genet. Author manuscript; available in PMC 2016 Oct 1.
Published in final edited form as: Hum Genet. 2015 Oct; 134(10): 1055–1068. Published online 2015 Jul 24. doi: 10.1007/s00439-015-1585-y
PMCID:
PMC4578871
AbstractArticlePDF–557K
10.
PPIP5K2 and PCSK1 are Candidate Genetic Contributors to Familial Keratoconus
Mariam Lofty Khaled, Yelena Bykhovskaya, Chunfang Gu, Alice Liu, Michelle D. Drewry, Zhong Chen, Barbara A. Mysona, Emily Parker, Ryan P. McNabb, Hongfang Yu, Xiaowen Lu, Jing Wang, Xiaohui Li, Abdulrahman Al-Muammar, Jerome I. Rotter, Louise F. Porter, Amy Estes, Mitchell A. Watsky, Sylvia B. Smith, Hongyan Xu, Khaled K. Abu-Amero, Anthony Kuo, Stephen B. Shears, Yaron S. Rabinowitz, Yutao Liu
Sci Rep. 2019; 9: 19406. Published online 2019 Dec 18. doi: 10.1038/s41598-019-55866-5
PMCID:
PMC6920454
AbstractArticlePDF–4.3M
11.
Mitochondrial Raf1 Regulates Glutamine Catabolism
Ronald L. Shanderson, Ian D. Ferguson, Zurab Siprashvili, Luca Ducoli, Albert M. Li, Weili Miao, Suhas Srinivasan, Mary Grace Velasco, Yang Li, Jiangbin Ye, Paul A. Khavari
Version 1. bioRxiv. Preprint. 2024 Mar 9. doi: 10.1101/2024.03.08.581297
PMCID:
PMC10942467
AbstractArticlePDF–6.5M
12.
N‐Terminomics for the Identification of In Vitro Substrates and Cleavage Site Specificity of the SARS‐CoV‐2 Main Protease
Tomas Koudelka, Juliane Boger, Alessandra Henkel, Robert Schönherr, Stefanie Krantz, Sabine Fuchs, Estefanía Rodríguez, Lars Redecke, Andreas Tholey
Proteomics. 2021 Jan; 21(2): 2000246. Published online 2020 Nov 17. doi: 10.1002/pmic.202000246
PMCID:
PMC7645863
AbstractArticlePDF–497K
13.
Fibril treatment changes protein interactions of tau and α-synuclein in human neurons
Tagan A. Griffin, Paul D. Schnier, Elisa M. Cleveland, Robert W. Newberry, Julia Becker, George A. Carlson
J Biol Chem. 2023 Mar; 299(3): 102888. Published online 2023 Jan 10. doi: 10.1016/j.jbc.2023.102888
PMCID:
PMC9978635
AbstractArticlePDF–10M
14.
An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity
Yuehui Zhang, Limin Shang, Jing Zhang, Yuchen Liu, Chaozhi Jin, Yanan Zhao, Xiaobo Lei, Wenjing Wang, Xia Xiao, Xiuyuan Zhang, Yujiao Liu, Linlin Liu, Meng-Wei Zhuang, Qingkun Mi, Chunyan Tian, Jianwei Wang, Fuchu He, Pei-Hui Wang, Jian Wang
Cell Chem Biol. 2022 Jan 20; 29(1): 5–18.e6. Published online 2021 Oct 20. doi: 10.1016/j.chembiol.2021.10.008
PMCID:
PMC8527578
AbstractArticlePDF–4.5M
15.
The human cytoplasmic dynein interactome reveals novel activators of motility
William B Redwine, Morgan E DeSantis, Ian Hollyer, Zaw Min Htet, Phuoc Tien Tran, Selene K Swanson, Laurence Florens, Michael P Washburn, Samara L Reck-Peterson
eLife. 2017; 6: e28257. Published online 2017 Jul 18. doi: 10.7554/eLife.28257
PMCID:
PMC5533585
AbstractArticlePDF–5.9M
16.
BAP1 regulation of the key adaptor protein NCoR1 is critical for γ-globin gene repression
Lei Yu, Natee Jearawiriyapaisarn, Mary P. Lee, Tomonori Hosoya, Qingqing Wu, Greggory Myers, Kim-Chew Lim, Ryo Kurita, Yukio Nakamura, Anne B. Vojtek, Jean-François Rual, James Douglas Engel
Genes Dev. 2018 Dec 1; 32(23-24): 1537–1549. doi: 10.1101/gad.318436.118
PMCID:
PMC6295165
AbstractArticlePDF–3.5M
17.
An organelle-specific protein landscape identifies novel diseases and molecular mechanisms
Karsten Boldt, Jeroen van Reeuwijk, Qianhao Lu, Konstantinos Koutroumpas, Thanh-Minh T. Nguyen, Yves Texier, Sylvia E. C. van Beersum, Nicola Horn, Jason R. Willer, Dorus A. Mans, Gerard Dougherty, Ideke J. C. Lamers, Karlien L. M. Coene, Heleen H. Arts, Matthew J. Betts, Tina Beyer, Emine Bolat, Christian Johannes Gloeckner, Khatera Haidari, Lisette Hetterschijt, Daniela Iaconis, Dagan Jenkins, Franziska Klose, Barbara Knapp, Brooke Latour, Stef J. F. Letteboer, Carlo L. Marcelis, Dragana Mitic, Manuela Morleo, Machteld M. Oud, Moniek Riemersma, Susan Rix, Paulien A. Terhal, Grischa Toedt, Teunis J. P. van Dam, Erik de Vrieze, Yasmin Wissinger, Ka Man Wu, Gordana Apic, Philip L. Beales, Oliver E. Blacque, Toby J. Gibson, Martijn A. Huynen, Nicholas Katsanis, Hannie Kremer, Heymut Omran, Erwin van Wijk, Uwe Wolfrum, François Kepes, Erica E. Davis, Brunella Franco, Rachel H. Giles, Marius Ueffing, Robert B. Russell, Ronald Roepman, UK10K Rare Diseases Group
Nat Commun. 2016; 7: 11491. Published online 2016 May 13. doi: 10.1038/ncomms11491
PMCID:
PMC4869170
AbstractArticlePDF–2.0M
18.
Substrate-Trapped Interactors of PHD3 and FIH Cluster in Distinct Signaling Pathways
Javier Rodriguez, Ruth Pilkington, Amaya Garcia Munoz, Lan K. Nguyen, Nora Rauch, Susan Kennedy, Naser Monsefi, Ana Herrero, Cormac T. Taylor, Alex von Kriegsheim
Cell Rep. 2016 Mar 22; 14(11): 2745–2760. Published online 2016 Mar 10. doi: 10.1016/j.celrep.2016.02.043
PMCID:
PMC4805855
AbstractArticlePDF–4.6M
19.
An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations
Xiaonan Liu, Kari Salokas, Fitsum Tamene, Yaming Jiu, Rigbe G. Weldatsadik, Tiina Öhman, Markku Varjosalo
Nat Commun. 2018; 9: 1188. Published online 2018 Mar 22. doi: 10.1038/s41467-018-03523-2
PMCID:
PMC5864832
AbstractArticlePDF–4.5M
20.
A Census of Human Soluble Protein Complexes
Pierre C. Havugimana, G. Traver Hart, Tamás Nepusz, Haixuan Yang, Andrei L. Turinsky, Zhihua Li, Peggy I. Wang, Daniel R. Boutz, Vincent Fong, Sadhna Phanse, Mohan Babu, Stephanie A. Craig, Pingzhao Hu, Cuihong Wan, James Vlasblom, Vaqaarun-Nisa Dar, Alexander Bezginov, Gregory W. Clark, Gabriel C. Wu, Shoshana J. Wodak, Elisabeth R.M. Tillier, Alberto Paccanaro, Edward M. Marcotte, Andrew Emili
Cell. Author manuscript; available in PMC 2013 Aug 31.
Published in final edited form as: Cell. 2012 Aug 31; 150(5): 1068–1081. doi: 10.1016/j.cell.2012.08.011
PMCID:
PMC3477804
AbstractArticlePDF–7.7M

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