RBBP1 - PMC

Douglas R. Hurst, Yi Xie, Kedar S. Vaidya, Alka Mehta, Blake P. Moore, Mary Ann Accavitti-Loper, Rajeev S. Samant, Ritu Saxena, Alexandra C. Silveira, Danny R. Welch

J Biol Chem. Author manuscript; available in PMC 2008 Apr 14.

Published in final edited form as: J Biol Chem. 2008; 283: 7438–7444. doi: 10.1074/jbc.M709446200

PMCID:: PMC2293288

Abstract Article PDF–761K

Select item 15576778.

Breast cancer metastasis suppressor 1 (BRMS1) is stabilized by the Hsp90 chaperone

Douglas R. Hurst, Alka Mehta, Blake P. Moore, Pushkar A. Phadke, William J. Meehan, Mary Ann Accavitti, Lalita A. Shevde, James E. Hopper, Yi Xie, Danny R. Welch, Rajeev S. Samant

Biochem Biophys Res Commun. Author manuscript; available in PMC 2007 Oct 6.

Published in final edited form as: Biochem Biophys Res Commun. 2006 Oct 6; 348(4): 1429–1435. Published online 2006 Aug 10. doi: 10.1016/j.bbrc.2006.08.005

PMCID:: PMC1557677

Abstract Article PDF–598K

Select item 67686369.

The structure of a highly-conserved picocyanobacterial protein reveals a Tudor domain with an RNA-binding function

Katherine M. Bauer, Rose Dicovitsky, Maria Pellegrini, Olga Zhaxybayeva, Michael J. Ragusa

J Biol Chem. 2019 Sep 27; 294(39): 14333–14344. Published online 2019 Aug 7. doi: 10.1074/jbc.RA119.007938

PMCID:: PMC6768636

Abstract Article PDF–2.2M

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Structural basis for the DNA-binding activity of human ARID4B Tudor domain

Jie Ren, Hongwei Yao, Wanhui Hu, Sarah Perrett, Weibin Gong, Yingang Feng

J Biol Chem. 2021 Jan-Jun; 296: 100506. Published online 2021 Mar 4. doi: 10.1016/j.jbc.2021.100506

Correction in:: J Biol Chem. 2022 Oct; 298(10): 102492.

PMCID:: PMC8038949

Abstract Article PDF–5.1M

Select item 600910311.

Gene Expression Profiling of Fibroblasts From a Human Progeroid Disease (Mandibuloacral Dysplasia, MAD #248370) Through cDNA Microarrays

Francesca Amati, Michela Biancolella, Maria Rosaria D’Apice, Stefano Gambardella, Ruggiero Mango, Paolo Sbraccia, Monica D’Adamo, Katia Margiotti, Annamaria Nardone, Marc Lewis, Giuseppe Novelli

Gene Expr. 2004; 12(1): 39–47. Published online 2018 Jun 20. doi: 10.3727/000000004783992189

PMCID:: PMC6009103

Abstract Article PDF–187K

Select item 40367612.

Identification and Analysis of Chromodomain-Containing Proteins Encoded in the Mouse Transcriptome

Khairina Tajul-Arifin, Rohan Teasdale, Timothy Ravasi, David A. Hume, RIKEN GER Group, GSL Members, John S. Mattick

Genome Res. 2003 Jun; 13(6b): 1416–1429. doi: 10.1101/gr.1015703

PMCID:: PMC403676

Abstract Article PDF–1.2M

Select item 1074321713.

Heterozygous Knockout of ARID4B Using CRISPR/Cas9 Attenuates Some Aggressive Phenotypes in a Breast Cancer Cell Line

Fernando Gonzalez-Salinas, Jessica Herrera-Gamboa, Rocio Rojo, Victor Trevino

Genes (Basel) 2023 Dec; 14(12): 2184. Published online 2023 Dec 6. doi: 10.3390/genes14122184

PMCID:: PMC10743217

Abstract Article PDF–3.3M

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Sequence Properties of an Intramolecular Interaction that Inhibits p53 DNA Binding

Emily Gregory, Gary W. Daughdrill

Biomolecules. 2022 Nov; 12(11): 1558. Published online 2022 Oct 25. doi: 10.3390/biom12111558

PMCID:: PMC9687289

Abstract Article PDF–51M

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Sex Steroid Regulation of Oxidative Stress in Bone Cells: An In Vitro Study

Valeria Sibilia, Daniele Bottai, Roberto Maggi, Francesca Pagani, Raffaella Chiaramonte, Domenica Giannandrea, Valentina Citro, Natalia Platonova, Lavinia Casati

Int J Environ Res Public Health. 2021 Nov; 18(22): 12168. Published online 2021 Nov 19. doi: 10.3390/ijerph182212168

PMCID:: PMC8621144

Abstract Article PDF–4.9M

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PR-SET7 and SUV4-20H regulate H4 lysine-20 methylation at imprinting control regions in the mouse

Maëlle Pannetier, Eric Julien, Gunnar Schotta, Mathieu Tardat, Claude Sardet, Thomas Jenuwein, Robert Feil

EMBO Rep. 2008 Oct; 9(10): 998–1005. Published online 2008 Aug 22. doi: 10.1038/embor.2008.147

PMCID:: PMC2525564

Abstract Article PDF–577K

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Epigenetic Memory in Mammals

Zoë Migicovsky, Igor Kovalchuk

Front Genet. 2011; 2: 28. Prepublished online 2011 May 15. Published online 2011 Jun 8. doi: 10.3389/fgene.2011.00028

PMCID:: PMC3268583

Abstract Article PDF–709K

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Direct Transcriptional Targets of Sex Steroid Hormones in Bone

Susan A. Krum

J Cell Biochem. Author manuscript; available in PMC 2012 Mar 20.

Published in final edited form as: J Cell Biochem. 2011 Feb; 112(2): 401–408. doi: 10.1002/jcb.22970

PMCID:: PMC3070194

Abstract Article PDF–335K

Select item 698375319.

Whole-Exome Sequencing of Matched Primary and Metastatic Papillary Thyroid Cancer

Tariq Masoodi, Abdul K. Siraj, Sarah Siraj, Saud Azam, Zeeshan Qadri, Wafaa N. Albalawy, Sandeep Kumar Parvathareddy, Saif S. Al-Sobhi, Fouad Al-Dayel, Fowzan S. Alkuraya, Khawla S. Al-Kuraya

Thyroid. January 2020; 30(1): 42–56. Published online 2020 Jan 21. doi: 10.1089/thy.2019.0052

PMCID:: PMC6983753

Abstract Article PDF–1.8M

Select item 311991120.

Mammalian Genomic Imprinting

Marisa S. Bartolomei, Anne C. Ferguson-Smith

Cold Spring Harb Perspect Biol. 2011 Jul; 3(7): a002592. doi: 10.1101/cshperspect.a002592

PMCID:: PMC3119911

Abstract Article PDF–777K

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FIGURE 4.

Comparison of the RBBP1 and JMJD2A Tudor domain structures. A, overall structural alignment of the RBBP1 Tudor domain (red) and the JMJD2A Tudor domain (green). B, structural alignment of RBBP1 HTD-1/2 (red) and JMJD2A HTD-1/2 (green). C, molecular surface of the RBBP1 Tudor domain (top) and the JMJD2A Tudor domain (bottom) colored according to electrostatic potential. Blue, positively charged; red, negatively charged.

Retinoblastoma-binding Protein 1 Has an Interdigitated Double Tudor Domain with DNA Binding Activity

J Biol Chem. 2014 Feb 21;289(8):4882-4895.
FIGURE 4.

Structure of the RBBP1 CD. A, stereo view of the backbone ensemble of 20 structures of RBBP1 CD. B, ribbon representation of the RBBP1 CD structure. C, superimposition of the CDs of human RBBP1 (red) and human MRG15 (blue). The residues involved in forming aromatic cages and structurally corresponding residues are shown as sticks.

Structural Insight into Recognition of Methylated Histone Tails by Retinoblastoma-binding Protein 1

J Biol Chem. 2012 Mar 9;287(11):8531-8540.
FIGURE 5.

Recognition of the RBBP1 CD by methylated histone tails. A, ¹H-¹⁵N HSQC spectra of RBBP1 CD titrated with H4K20me3 peptide. B, bar diagram of chemical shift perturbations versus residue number at molar ratio 1:12 of the RBBP1 CD to various peptides. C, mapping of chemical shift perturbation to the RBBP1 CD structure.

Structural Insight into Recognition of Methylated Histone Tails by Retinoblastoma-binding Protein 1

J Biol Chem. 2012 Mar 9;287(11):8531-8540.
FIGURE 7.

The enhanced binding of the RBBP1 CD with H4K20me3 in the presence of dsDNA. A, ¹H-¹⁵N HSQC spectra of the RBBP1 CD in the presence of dsDNA during titration with H4K20me3. The spectra with CD:H4K20me3 in molar ratios of 1:0, 1:0.5, 1:1.5, 1:3.5, and 1:5.0 are in black, cyan, blue, green, and red, respectively. B, K_D values for binding of RBBP1 CD to H4K20me3 in the presence of dsDNA from NMR titration experiments. C and D, ITC results of H4K20me3 titration with RBBP1 CD in the absence (C) and presence (D) of dsDNA (CD:dsDNA = 1:1.5), respectively.

Structural Insight into Recognition of Methylated Histone Tails by Retinoblastoma-binding Protein 1

J Biol Chem. 2012 Mar 9;287(11):8531-8540.

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RBBP1 (101)
PMC
hic1 [Alosa sapidissima]
hic1 [Alosa sapidissima]
Gene ID:121684048

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hic1 [Polyodon spathula]
hic1 [Polyodon spathula]
Gene ID:121308703

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hic1 [Esox lucius]
hic1 [Esox lucius]
Gene ID:105023188

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C4B [Gorilla gorilla gorilla]
C4B [Gorilla gorilla gorilla]
Gene ID:101148680

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