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Select item 77947321.

Molecular Bases of Fruit Quality in Prunus Species: An Integrated Genomic, Transcriptomic, and Metabolic Review with a Breeding Perspective

Beatriz E. García-Gómez, Juan A. Salazar, María Nicolás-Almansa, Mitra Razi, Manuel Rubio, David Ruiz, Pedro Martínez-Gómez

Int J Mol Sci. 2021 Jan; 22(1): 333. Published online 2020 Dec 30. doi: 10.3390/ijms22010333

PMCID:: PMC7794732

Abstract Article PDF–3.3M

Select item 98502612.

Commodity risk assessment of Prunus persica and P. dulcis plants from Türkiye

EFSA Panel on Plant Health (PLH), Claude Bragard, Paula Baptista, Elisavet Chatzivassiliou, Paolo Gonthier, Josep Anton Jaques Miret, Annemarie Fejer Justesen, Alan MacLeod, Christer Sven Magnusson, Panagiotis Milonas, Juan A Navas‐Cortes, Stephen Parnell, Roel Potting, Philippe Lucien Reignault, Emilio Stefani, Hans‐Hermann Thulke, Wopke Van der Werf, Antonio Vicent Civera, Lucia Zappalà, Andrea Lucchi, Pedro Gómez, Gregor Urek, Umberto Bernardo, Giovanni Bubici, Anna Vittoria Carluccio, Michela Chiumenti, Francesco Di Serio, Elena Fanelli, Agata Kaczmarek, Cristina Marzachì, Olaf Mosbach‐Schulz, Jonathan Yuen

EFSA J. 2023 Jan; 21(1): e07735. Published online 2023 Jan 19. doi: 10.2903/j.efsa.2023.7735

PMCID:: PMC9850261

Abstract Article PDF–19M

Select item 106272793.

A haplotype-resolved chromosome-scale genome for Quercus rubra L. provides insights into the genetics of adaptive traits for red oak species

Beant Kapoor, Jerry Jenkins, Jeremy Schmutz, Tatyana Zhebentyayeva, Carsten Kuelheim, Mark Coggeshall, Chris Heim, Jesse R Lasky, Laura Leites, Nurul Islam-Faridi, Jeanne Romero-Severson, Victoria L DeLeo, Sarah M Lucas, Desanka Lazic, Oliver Gailing, John Carlson, Margaret Staton

G3 (Bethesda) 2023 Nov; 13(11): jkad209. Published online 2023 Sep 14. doi: 10.1093/g3journal/jkad209

PMCID:: PMC10627279

Abstract Article PDF–1.5M

Select item 65549954.

Genome sequencing provides insights into the evolution and antioxidant activity of Chinese bayberry

Haiying Ren, Haiyan Yu, Shuwen Zhang, Senmiao Liang, Xiliang Zheng, Shujian Zhang, Pu Yao, Hongkun Zheng, Xingjiang Qi

BMC Genomics. 2019; 20: 458. Published online 2019 Jun 6. doi: 10.1186/s12864-019-5818-7

PMCID:: PMC6554995

Abstract Article PDF–3.1M

Select item 92146345.

Commodity risk assessment of Prunus domestica plants from Ukraine

EFSA Panel on Plant Health (PLH), Claude Bragard, Elisavet Chatzivassiliou, Katharina Dehnen‐Schmutz, Paula Baptista, Paolo Gonthier, Marie‐Agnès Jacques, Josep Anton Jaques Miret, Annemarie Fejer Justesen, Alan MacLeod, Christer Sven Magnusson, Panagiotis Milonas, Juan A Navas‐Cortes, Stephen Parnell, Roel Potting, Philippe L Reignault, Emilio Stefani, Hans‐Hermann Thulke, Wopke Van der Werf, Antonio Vicent, Lucia Zappalà, Andrea Lucchi, Pedro Gómez, Gregor Urek, Umberto Bernardo, Giovanni Bubici, Anna Vittoria Carluccio, Michela Chiumenti, Francesco Di Serio, Elena Fanelli, Cristina Marzachì, Ciro Gardi, Olaf Mosbach‐Schulz, Eduardo de la Peña, Jonathan Yuen

EFSA J. 2022 Jun; 20(6): e07391. Published online 2022 Jun 22. doi: 10.2903/j.efsa.2022.7391

PMCID:: PMC9214634

Abstract Article PDF–11M

Select item 106658856.

Genome-wide identification of the PFK gene family and their expression analysis in Quercus rubra

Tae-Lim Kim, Hyemin Lim, Michael Immanuel Jesse Denison, Sathishkumar Natarajan, Changyoung Oh

Front Genet. 2023; 14: 1289557. Published online 2023 Nov 9. doi: 10.3389/fgene.2023.1289557

PMCID:: PMC10665885

Abstract Article PDF–6.4M

Select item 95493407.

Genome-wide analysis of UDP-glycosyltransferase gene family and identification of members involved in flavonoid glucosylation in Chinese bayberry (Morella rubra)

Chuanhong Ren, Yunlin Cao, Mengyun Xing, Yan Guo, Jiajia Li, Lei Xue, Chongde Sun, Changjie Xu, Kunsong Chen, Xian Li

Front Plant Sci. 2022; 13: 998985. Published online 2022 Sep 26. doi: 10.3389/fpls.2022.998985

PMCID:: PMC9549340

Abstract Article PDF–6.6M

Select item 45919948.

Phylogeny of Morella rubra and Its Relatives (Myricaceae) and Genetic Resources of Chinese Bayberry Using RAD Sequencing

Luxian Liu, Xinjie Jin, Nan Chen, Xian Li, Pan Li, Chengxin Fu

PLoS One. 2015; 10(10): e0139840. Published online 2015 Oct 2. doi: 10.1371/journal.pone.0139840

PMCID:: PMC4591994

Abstract Article PDF–1.4M

Select item 103760999.

Involvement of a MYB Transcription Factor in Anthocyanin Biosynthesis during Chinese Bayberry (Morella rubra) Fruit Ripening

Saisai Li, Yijuan Zhang, Liyu Shi, Shifeng Cao, Wei Chen, Zhenfeng Yang

Biology (Basel) 2023 Jul; 12(7): 894. Published online 2023 Jun 21. doi: 10.3390/biology12070894

PMCID:: PMC10376099

Abstract Article PDF–2.3M

Select item 943772210.

Identification of UDP-rhamnosyltransferases and UDP-galactosyltransferase involved in flavonol glycosylation in Morella rubra

Chuanhong Ren, Yan Guo, Linfeng Xie, Zhikang Zhao, Mengyun Xing, Yunlin Cao, Yilong Liu, Jing Lin, Donald Grierson, Bo Zhang, Changjie Xu, Kunsong Chen, Xian Li

Hortic Res. 2022; 9: uhac138. Published online 2022 Jun 20. doi: 10.1093/hr/uhac138

PMCID:: PMC9437722

Abstract Article PDF–1.7M

Select item 872215511.

MYB transcription factor family in sweet cherry (Prunus avium L.): genome-wide investigation, evolution, structure, characterization and expression patterns

Irfan Ali Sabir, Muhammad Aamir Manzoor, Iftikhar Hussain Shah, Xunju Liu, Muhmmad Salman Zahid, Songtao Jiu, Jiyuan Wang, Muhammad Abdullah, Caixi Zhang

BMC Plant Biol. 2022; 22: 2. Published online 2022 Jan 3. doi: 10.1186/s12870-021-03374-y

PMCID:: PMC8722155

Abstract Article PDF–6.6M

Select item 310860512.

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

Robert K. Jansen, Christopher Saski, Seung-Bum Lee, Anne K. Hansen, Henry Daniell

Mol Biol Evol. 2011 Jan; 28(1): 835–847. Published online 2010 Oct 8. doi: 10.1093/molbev/msq261

PMCID:: PMC3108605

Abstract Article PDF–7.0M

Select item 551327813.

American trees shift their niches when invading Western Europe: evaluating invasion risks in a changing climate

Etienne Camenen, Annabel J. Porté, Marta Benito Garzón

Ecol Evol. 2016 Oct; 6(20): 7263–7275. Published online 2016 Sep 22. doi: 10.1002/ece3.2376

PMCID:: PMC5513278

Abstract Article PDF–2.2M

Select item 391785014.

High-Level Genetic Diversity and Complex Population Structure of Siberian Apricot (Prunus sibirica L.) in China as Revealed by Nuclear SSR Markers

Zhe Wang, Ming Kang, Huabo Liu, Jiao Gao, Zhengdong Zhang, Yingyue Li, Rongling Wu, Xiaoming Pang

PLoS One. 2014; 9(2): e87381. Published online 2014 Feb 7. doi: 10.1371/journal.pone.0087381

PMCID:: PMC3917850

Abstract Article PDF–1.2M

Select item 415632615.

Archaeological Evidence for Peach (Prunus persica) Cultivation and Domestication in China

Yunfei Zheng, Gary W. Crawford, Xugao Chen

PLoS One. 2014; 9(9): e106595. Published online 2014 Sep 5. doi: 10.1371/journal.pone.0106595

PMCID:: PMC4156326

Abstract Article PDF–1.1M

Select item 289015716.

Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees

U. Damm, P.H. Fourie, P.W. Crous

Persoonia. 2010 Jun; 24: 60–80. Published online 2010 Apr 1. doi: 10.3767/003158510X500705

PMCID:: PMC2890157

Abstract Article PDF–2.2M

Select item 1026207017.

Update of the Xylella spp. host plant database – systematic literature search up to 31 December 2022

European Food Safety Authority (EFSA), Davide Gibin, Luca Pasinato, Alice Delbianco

EFSA J. 2023 Jun; 21(6): e08061. Published online 2023 Jun 13. doi: 10.2903/j.efsa.2023.8061

PMCID:: PMC10262070

Abstract Article PDF–5.2M

Select item 982723418.

Update of the Xylella spp. host plant database – systematic literature search up to 30 June 2022

European Food Safety Authority (EFSA), Alice Delbianco, Davide Gibin, Luca Pasinato, Donato Boscia, Massimiliano Morelli

EFSA J. 2023 Jan; 21(1): e07726. Published online 2023 Jan 9. doi: 10.2903/j.efsa.2023.7726

PMCID:: PMC9827234

Abstract Article PDF–6.3M

Select item 921375319.

An Anthocyanin-Related Glutathione S-Transferase, MrGST1, Plays an Essential Role in Fruit Coloration in Chinese Bayberry (Morella rubra)

Lei Xue, Xiaorong Huang, Zehuang Zhang, Qihua Lin, Qiuzhen Zhong, Yun Zhao, Zhongshan Gao, Changjie Xu

Front Plant Sci. 2022; 13: 903333. Published online 2022 Jun 8. doi: 10.3389/fpls.2022.903333

PMCID:: PMC9213753

Abstract Article PDF–3.8M

Select item 919869520.

Update of the Xylella spp. host plant database – systematic literature search up to 31 December 2021

European Food Safety Authority (EFSA), Alice Delbianco, Davide Gibin, Luca Pasinato, Donato Boscia, Massimiliano Morelli

EFSA J. 2022 Jun; 20(6): e07356. Published online 2022 Jun 15. doi: 10.2903/j.efsa.2022.7356

PMCID:: PMC9198695

Abstract Article PDF–7.0M

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Figure 4

Syntenic analysis of MYB9 genes between Morella rubra and other plant species, including Juglans regia, Prunus persica, Malus domestica, and Vitis vinifera. Gray lines in the backgroud show collinear blocks within Morella rubra and other plant genomes. The red lines indicate segmentally duplicated MYB9 gene pairs.

Involvement of a MYB Transcription Factor in Anthocyanin Biosynthesis during Chinese Bayberry (Morella rubra) Fruit Ripening

Biology (Basel). 2023 Jul;12(7):894.
Fig. 3

Vascular discolorations in the sapwood of inoculated seedlings of a) Ailanthus altissima; b) Acer negundo; c) Acer platanoides; d) Castanea sativa; e) Prunus avium; f) Prunus serotina; g) Quercus petraea; h) Quercus rubra; i) Sorbus aucuparia; j) Ulmus glabra

Further pathogenicity testing of Verticillium nonalfalfae, a biocontrol agent against the invasive Tree of Heaven (Ailanthus altissima), on non-target tree species in Europe

Phytoparasitica. 2023;51(1):113-130.
Figure 1

Phylogenetic tree analysis of NRT1.1. (A) Phylogenetic relationship analysis of MdNRT1.1 and 14 other plant NRT1.1 proteins obtained from the NCBI database. MdNRT1.1: Malus domestica, XP_008358135.1; CiNRT1.1: Carya illinoinensis, KAG6685326.1; MbNRT1.1: Malus baccata, TQE14061.1; MrNRT1.1: Morella rubra, KAB1217036.1; NsNRT1.1: Nyssa sinensis, KAA8522245.1; PaNRT1.1: Prunus armeniaca, CAB4279591.1; PvNRT1.1: Prunus avium, XP_021823895.1; PdNRT1.1: Prunus dulcis, XP_034214918.1; PmNRT1.1: Prunus mume, XP_008238567.1; PpNRT1.1: Prunus persica, ONI06660.1; QiNRT1.1: Quercus Iobata, XP_030948025.1; QsNRT1.1: Quercus suber, POE48521.1; RcNRT1.1: Rosa chinensis, XP_024168946.1; TpNRT1.1: Trifolium pratense, XP_045789551.1; XsNRT1.1: Xanthoceras sorbifolium, KAH7549611.1. (B) The conserved domains of MdNRT1.1 and AtNRT1.1 were analyzed by MEME. (C) The 3D structure map of the MdNRT1.1 protein.

Identification and Functional Characterization of MdNRT1.1 in Nitrogen Utilization and Abiotic Stress Tolerance in Malus domestica

Int J Mol Sci. 2023 Jun;24(11):9291.
Figure 5

Protein sequence alignment (A) and phylogenetic tree (B) of MrMYB9 (red dot) and R2R3 MYB activators that modulate the synthesis of anthocyanin in other species. These are the GenBank accession: Fragaria ananasa FaMYB9 (OK001453); Prunus persica PpMYB6 (XM_007226528); Morella rubra MrMYB1 (GQ340767); Arabidopsis thaliana AtMYB3 (At1g22640), AtMYB4 (AT4G38620), AtMYB32 (AT4G34990), and AtMYB123 (AT5G35550); Vitis vinifera VvMYBA1 (BAD18977) and VvMYBA2 (BAD18978), and Malus domestica MdMYB3 (AEX08668), MdMYB23 (AAZ20439), MdMYB110a (BAM84362), and MdMYB308L (MDP0000950559).

Involvement of a MYB Transcription Factor in Anthocyanin Biosynthesis during Chinese Bayberry (Morella rubra) Fruit Ripening

Biology (Basel). 2023 Jul;12(7):894.

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Prunus rubra (1390)
PMC
mntR 1 300ug/mL WT calprotectin
mntR 1 300ug/mL WT calprotectin

biosample
PREDICTED: Dendroctonus ponderosae sodium- and chloride-dependent neutral and ba...
PREDICTED: Dendroctonus ponderosae sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) (LOC109541811), transcript variant X1, mRNA
gi|2252289271|ref|XM_019910783.2|

Nucleotide
Primula elatior population 19 tRNA-Thr (trnT) gene, partial sequence; trnT-psbD ...
Primula elatior population 19 tRNA-Thr (trnT) gene, partial sequence; trnT-psbD intergenic spacer, complete sequence; and photosystem II protein D2 (psbD) gene, partial cds; plastid
gi|402536177|gb|JX231037.1|

Nucleotide
Primula elatior population 10 tRNA-Thr (trnT) gene, partial sequence; trnT-psbD ...
Primula elatior population 10 tRNA-Thr (trnT) gene, partial sequence; trnT-psbD intergenic spacer, complete sequence; and photosystem II protein D2 (psbD) gene, partial cds; plastid
gi|402536159|gb|JX231028.1|

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