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Select item 104688751.

Genomic analyses reveal a low-temperature adapted clade in Halorubrum, a widespread haloarchaeon across global hypersaline environments

Liangzhong Chen, Tao Hong, Zirui Wu, Weizhi Song, Shaoxing X. Chen, Yongqin Liu, Liang Shen

BMC Genomics. 2023; 24: 508. Published online 2023 Aug 31. doi: 10.1186/s12864-023-09597-7

PMCID:: PMC10468875

Abstract Article PDF–1.9M

Select item 73867892.

Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996

Carmen Infante-Domínguez, Rafael R. de la Haba, Paulina Corral, Cristina Sanchez-Porro, David R. Arahal, Antonio Ventosa

Int J Syst Evol Microbiol. 2020 Mar; 70(3): 1698–1705. Published online 2020 Jan 23. doi: 10.1099/ijsem.0.003956

PMCID:: PMC7386789

Abstract Article PDF–2.5M

Select item 87270673.

VOLN27B: A New Head-Tailed Halovirus Isolated from an Underground Salt Crystal and Infecting Halorubrum

Shaoxing Chen, Yongpei Dai, Jingwen Liu, Shimin Zhang, Feilong Chen, Fanjie Jin, Peiyao Ruan, Lu Li, Xiangdong Chen

Archaea. 2021; 2021: 8271899. Published online 2021 Dec 14. doi: 10.1155/2021/8271899

PMCID:: PMC8727067

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Select item 73491774.

Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum

Mikhail G. Pyatibratov, Alexey S. Syutkin, Tessa E. F. Quax, Tatjana N. Melnik, R. Thane Papke, Johann Peter Gogarten, Igor I. Kireev, Alexey K. Surin, Sergei N. Beznosov, Anna V. Galeva, Oleg V. Fedorov

Microbiologyopen. 2020 Jul; 9(7): e1047. Published online 2020 Apr 21. doi: 10.1002/mbo3.1047

PMCID:: PMC7349177

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Select item 58901605.

Genotypic and Lipid Analyses of Strains From the Archaeal Genus Halorubrum Reveal Insights Into Their Taxonomy, Divergence, and Population Structure

Rafael R. de la Haba, Paulina Corral, Cristina Sánchez-Porro, Carmen Infante-Domínguez, Andrea M. Makkay, Mohammad A. Amoozegar, Antonio Ventosa, R. Thane Papke

Front Microbiol. 2018; 9: 512. Published online 2018 Mar 29. doi: 10.3389/fmicb.2018.00512

PMCID:: PMC5890160

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Select item 31825356.

Halorubrum chaoviator sp. nov., a haloarchaeon isolated from sea salt in Baja California, Mexico, Western Australia and Naxos, Greece

Rocco L. Mancinelli, Ragnhild Landheim, Cristina Sanchez-Porro, Marion Dornmayr-Pfaffenhuemer, Claudia Gruber, Andrea Legat, Antonio Ventosa, Christian Radax, Kunio Ihara, Melisa R. White, Helga Stan-Lotter

Int J Syst Evol Microbiol. Author manuscript; available in PMC 2011 Sep 29.

Published in final edited form as: Int J Syst Evol Microbiol. 2009 Aug; 59(Pt 8): 1908–1913. Published online 2009 Jun 30. doi: 10.1099/ijs.0.000463-0

PMCID:: PMC3182535

Abstract Article PDF–400K

Select item 61371437.

Sialic Acid-Like Sugars in Archaea: Legionaminic Acid Biosynthesis in the Halophile Halorubrum sp. PV6

Marianna Zaretsky, Elina Roine, Jerry Eichler

Front Microbiol. 2018; 9: 2133. Published online 2018 Sep 7. doi: 10.3389/fmicb.2018.02133

PMCID:: PMC6137143

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Select item 110780078.

Using the pan-genomic framework for the discovery of genomic islands in the haloarchaeon Halorubrum ezzemoulense

Yutian Feng, Danielle Arsenault, Artemis S. Louyakis, Neta Altman-Price, Uri Gophna, R. Thane Papke, Johann Peter Gogarten

mBio. 2024 May; 15(5): e00408-24. Published online 2024 Apr 15. doi: 10.1128/mbio.00408-24

PMCID:: PMC11078007

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Select item 34974849.

Genome Sequence of Halorubrum sp. Strain T3, an Extremely Halophilic Archaeon Harboring a Virus-Like Element

Shaoxing Chen, Chuanming Wang, Zhiwei Zhao, Zhu L. Yang

J Bacteriol. 2012 Dec; 194(23): 6608–6609. doi: 10.1128/JB.01528-12

PMCID:: PMC3497484

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Select item 273950810.

Archaeosomes made of Halorubrum tebenquichense total polar lipids: a new source of adjuvancy

Raul O Gonzalez, Leticia H Higa, Romina A Cutrullis, Marcos Bilen, Irma Morelli, Diana I Roncaglia, Ricardo S Corral, Maria Jose Morilla, Patricia B Petray, Eder L Romero

BMC Biotechnol. 2009; 9: 71. Published online 2009 Aug 13. doi: 10.1186/1472-6750-9-71

PMCID:: PMC2739508

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Select item 1053724311.

Identification, Antioxidant Capacity, and Matrix Metallopeptidase 9 (MMP-9) In Silico Inhibition of Haloarchaeal Carotenoids from Natronococcus sp. and Halorubrum tebenquichense

Mariana Delgado-Garcia, Osvaldo Gómez-Secundino, Jorge A. Rodríguez, Juan Carlos Mateos-Díaz, Marcelo Muller-Santos, Cristobal N. Aguilar, Rosa Maria Camacho-Ruiz

Microorganisms. 2023 Sep; 11(9): 2344. Published online 2023 Sep 19. doi: 10.3390/microorganisms11092344

PMCID:: PMC10537243

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Select item 1038420312.

Influence of N-Glycosylation on Virus–Host Interactions in Halorubrum lacusprofundi

L. Johanna Gebhard, Zlata Vershinin, Tomás Alarcón-Schumacher, Jerry Eichler, Susanne Erdmann

Viruses. 2023 Jul; 15(7): 1469. Published online 2023 Jun 28. doi: 10.3390/v15071469

PMCID:: PMC10384203

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Select item 887531213.

Halorubrum pleomorphic virus-6 Membrane Fusion Is Triggered by an S-Layer Component of Its Haloarchaeal Host

Eduardo A. Bignon, Kevin R. Chou, Elina Roine, Nicole D. Tischler

Viruses. 2022 Feb; 14(2): 254. Published online 2022 Jan 27. doi: 10.3390/v14020254

PMCID:: PMC8875312

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Select item 313263114.

Characterization of Halorubrum sfaxense sp. nov., a New Halophilic Archaeon Isolated from the Solar Saltern of Sfax in Tunisia

Hana Trigui, Salma Masmoudi, Céline Brochier-Armanet, Sami Maalej, Sam Dukan

Int J Microbiol. 2011; 2011: 240191. Published online 2011 Jun 2. doi: 10.1155/2011/240191

PMCID:: PMC3132631

Abstract Article PDF–943K

Select item 279836615.

The Single-Stranded DNA Genome of Novel Archaeal Virus Halorubrum Pleomorphic Virus 1 Is Enclosed in the Envelope Decorated with Glycoprotein Spikes

Maija K. Pietilä, Simonas Laurinavičius, Jukka Sund, Elina Roine, Dennis H. Bamford

J Virol. 2010 Jan; 84(2): 788–798. Published online 2009 Oct 28. doi: 10.1128/JVI.01347-09

PMCID:: PMC2798366

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Select item 359418616.

Amino Acid Substitutions in Cold-Adapted Proteins from Halorubrum lacusprofundi, an Extremely Halophilic Microbe from Antarctica

Shiladitya DasSarma, Melinda D. Capes, Ram Karan, Priya DasSarma

PLoS One. 2013; 8(3): e58587. Published online 2013 Mar 11. doi: 10.1371/journal.pone.0058587

PMCID:: PMC3594186

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Select item 511869917.

Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi

Y. Liao, T. J. Williams, J. Ye, J. Charlesworth, B. P. Burns, A. Poljak, M. J. Raftery, R. Cavicchioli

Sci Rep. 2016; 6: 37454. Published online 2016 Nov 22. doi: 10.1038/srep37454

PMCID:: PMC5118699

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Select item 628153818.

Characterization of a new exopolysaccharide produced by Halorubrum sp. TBZ112 and evaluation of its anti-proliferative effect on gastric cancer cells

Masoud Hamidi, Rasool Mirzaei, Cédric Delattre, Korosh Khanaki, Guillaume Pierre, Christine Gardarin, Emmanuel Petit, Fatemeh Karimitabar, Sobhan Faezi

3 Biotech. 2019 Jan; 9(1): 1. Published online 2018 Dec 5. doi: 10.1007/s13205-018-1515-5

PMCID:: PMC6281538

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Select item 786097119.

Production of Poly(3-Hydroxybutyrate) by Haloarcula, Halorubrum, and Natrinema Haloarchaeal Genera Using Starch as a Carbon Source

Fatma Karray, Manel Ben Abdallah, Nidhal Baccar, Hatem Zaghden, Sami Sayadi

Archaea. 2021; 2021: 8888712. Published online 2021 Jan 26. doi: 10.1155/2021/8888712

PMCID:: PMC7860971

Abstract Article PDF–905K

Select item 1076296920.

Optimization of bacterioruberin production from Halorubrum ruber and assessment of its antioxidant potential

Chi Young Hwang, Eui-Sang Cho, Sungjun Kim, Kyobum Kim, Myung-Ji Seo

Microb Cell Fact. 2024; 23: 2. Published online 2024 Jan 3. doi: 10.1186/s12934-023-02274-0

PMCID:: PMC10762969

Abstract Article PDF–2.8M

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Figure 1

Repeatability of the fingerprinting technique. Each number represents a type strain analyzed in triplicate. (1) Halorubrum arcis JCM 13916 (2) Halorubrum coriense DSM 10284 (3) Halorubrum distributum JCM 9100 (4) Halorubrum ejinorense JCM 14265 (5) Halorubrum lacusprofundi ATCC 49239 (6) Halorubrum lipolyticum DSM 21995 (7) Halorubrum litoreum JCM 13561 (8) Halorubrum saccharovorum DSM 1137 (9) Halorubrum sodomense JCM 8880 (10) Halorubrum tebenquichense DSM 14210 (11) Halorubrum terrestre JCM 10247 (12) Halorubrum tibetense JCM 11889 (13) Halorubrum trapanicum JCM 10477 (14) Halorubrum vacuolatum JCM 9060 (15) Halorubrum xinjiangense JCM 12388 (16) Halosarcina pallida JCM 14848 (17) Halosimplex carlsbadense JCM 11222 (18) Halostagnicola larsenii JCM 13463.

Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations

Front Microbiol. 2014;5:143.
Fig. 4.

Venn diagram showing the core orthologous and unique proteins for the type strains of Halorubrum distributum JCM 9100^T, Halorubrum terrestre JCM 10247^T, Halorubrum arcis JCM 13916^T and Halorubrum litoreum JCM 13561^T.

Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996

Int J Syst Evol Microbiol. 2020 Mar;70(3):1698-1705.
Figure 1

Growth status after 48 h incubation (a) in YCM2 medium, growth curve (b) and bacterioruberin accumulation (c) in YCM1 medium of H. kocurii 2020YC7 at 50, 100, 150, 200, 250 g/L NaCl concentration. Maximum likelihood (ML) algorithm method phylogenetic tree (d), based on 16s rRNA gene sequence of H.kocurii 2020YC7 (“▲” marked), and compared with Halorubrum sp. YIM 93749 (JF449434) Halorubrum sp. strain LN27 (MN829451), Halorubrum sp. PG-1 (KJ644278), Halorubrum saccharovorum strain JCM 8865 (NR_113484), Halorubrum sp. LZY-12 (KJ644292), Halorubrum lipolyticum strain JCM 13559 (NR_113480), H. kocurii JCM 14978 (NR_113215), Halorubrum lacusprofundi ATCC 49239 (NR_074194), Halorubrum sp. YC-9 (JN216854), Halobaculum gomorrense JCM 9908 (AB477983), Salinigranum rubrum GX10 (GU951431).

The Osmoprotectant Switch of Potassium to Compatible Solutes in an Extremely Halophilic Archaea Halorubrum kocurii 2020YC7

Genes (Basel). 2022 Jun;13(6):939.
Figure 4

HPTLC stained with 5% (v/v) sulfuric acid showing the polar lipid profiles for Halorubrum strains belonging to group 1 and related taxa (A), to group 2 and related taxa (B), and to group 3 and related taxa (C). Hbt. salin, Halobacterium salinarum DSM 3754^T; Hrr. sacch, Halorubrum saccharovorum DSM 1137^T; Hrr. chaov, Halorubrum chaoviator Halo-G^*^T; Hrr. ezze, Halorubrum ezzemoulense DSM 17463^T; Hrr. tibet, Halorubrum tibetense JCM 11889^T; Ncc. amy, Natronococcus amylolyticus DSM 10524^T; Hrr. kocurii, Halorubrum kocurii CECT 7322^T; Hrr. cibi, Halorubrum cibi JCM 15757^T. BPG, biphosphatidylglycerol; PG, phosphatidylglycerol; PGP-Me, phosphatidylglycerolphosphate methyl ester; PGS, phosphatidylglycerolsulfate; GL, unidentified glycolipid; S-DGD, sulfated mannosyl glucosyl diether; S-TGD-1-PA, sulfated galactosyl mannosy glucosyl dietherphosphatidic acid; S-TeGD, sulfated tetraglycosyl diether.

Genotypic and Lipid Analyses of Strains From the Archaeal Genus Halorubrum Reveal Insights Into Their Taxonomy, Divergence, and Population Structure

Front Microbiol. 2018;9:512.