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Select item 108686931.

Genetic diversity of Gallus sp. in Southeast Asia based on d-lopp: In silico study

Zultinur Muttaqin, Tike Sartika, Ferdy Saputra

J Adv Vet Anim Res. 2023 Dec; 10(4): 817–819. Published online 2023 Dec 31. doi: 10.5455/javar.2023.j738

PMCID:: PMC10868693

Abstract Article PDF–331K

Select item 108493282.

The main genetic locus associated with the evolution of gamecocks is centered on ISPD

Andres Bendesky, Joseph Brew, Kerel X Francis, Enrique F Tello Corbetto, Antonio González Ariza, Sergio Nogales Baena, Tsuyoshi Shimmura

G3 (Bethesda) 2024 Feb; 14(2): jkad267. Published online 2023 Nov 22. doi: 10.1093/g3journal/jkad267

PMCID:: PMC10849328

Abstract Article PDF–902K

Select item 104736543.

Noncoding genetic variation in ISPD distinguishes gamecocks from nongame chickens

Andres Bendesky, Joseph Brew, Kerel X. Francis, Enrique F. Tello Corbetto, Antonio González Ariza, Sergio Nogales Baena, Tsuyoshi Shimmura

Version 1. bioRxiv. Preprint. 2023 Aug 21. doi: 10.1101/2023.08.16.553562

PMCID:: PMC10473654

Abstract Article PDF–6.1M

Select item 100161964.

Characteristics of the complete mitochondrial genome of Douhua chicken (Gallus gallus) and phylogenetic considerations

Sihua Jin, Yuqing Jia, Lijun Jiang, Chengcheng Cao, Yunfei Ding, Taikang Zhang, Xuling Liu, Yongsheng Li, Zhaoyu Geng

J Anim Sci. 2023; 101: skad064. Published online 2023 Feb 27. doi: 10.1093/jas/skad064

PMCID:: PMC10016196

Abstract Article PDF–1.3M

Select item 94591175.

Exploring the optimal strategy of imputation from SNP array to whole-genome sequencing data in farm animals

Yifan Jiang, Hailiang Song, Hongding Gao, Qin Zhang, Xiangdong Ding

Front Genet. 2022; 13: 963654. Published online 2022 Aug 26. doi: 10.3389/fgene.2022.963654

PMCID:: PMC9459117

Abstract Article PDF–2.5M

Select item 75539246.

GalliForm, a database of Galliformes occurrence records from the Indo-Malay and Palaearctic, 1800–2008

Elizabeth H. Boakes, Richard A. Fuller, Georgina M. Mace, Changqing Ding, Tzo Tze Ang, Alistair G. Auffret, Natalie E. Clark, Jonathon Dunn, Jennifer Gilbert, Viktor Golovnyuk, Garima Gupta, Ulrike Irlich, Emily Joachim, Kim O’ Connor, Eugene Potapov, Roald Potapov, Judith Schleicher, Sarah Stebbing, Terry Townshend, Philip J. K. McGowan

Sci Data. 2020; 7: 344. Published online 2020 Oct 13. doi: 10.1038/s41597-020-00690-0

PMCID:: PMC7553924

Abstract Article PDF–1.4M

Select item 71718277.

Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds

Xunhe Huang, Newton O. Otecko, Minsheng Peng, Zhuoxian Weng, Weina Li, Jiebo Chen, Ming Zhong, Fusheng Zhong, Sihua Jin, Zhaoyu Geng, Wei Luo, Danlin He, Cheng Ma, Jianlin Han, Sheila C. Ommeh, Yaping Zhang, Xiquan Zhang, Bingwang Du

BMC Genomics. 2020; 21: 316. Published online 2020 Apr 20. doi: 10.1186/s12864-020-6736-4

PMCID:: PMC7171827

Abstract Article PDF–2.8M

Select item 55265298.

A novel mitochondrial genome of Arborophila and new insight into Arborophila evolutionary history

Chaochao Yan, Biqin Mou, Yang Meng, Feiyun Tu, Zhenxin Fan, Megan Price, Bisong Yue, Xiuyue Zhang

PLoS One. 2017; 12(7): e0181649. Published online 2017 Jul 25. doi: 10.1371/journal.pone.0181649

PMCID:: PMC5526529

Abstract Article PDF–5.1M

Select item 55228929.

Morphological variation in brain through domestication of fowl

Soichiro Kawabe, Naoki Tsunekawa, Kohei Kudo, Chanin Tirawattanawanich, Fumihito Akishinonomiya, Hideki Endo

J Anat. 2017 Aug; 231(2): 287–297. Published online 2017 May 24. doi: 10.1111/joa.12623

PMCID:: PMC5522892

Abstract Article PDF–967K

Select item 504157810.

Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes

Androniki Psifidi, Georgios Banos, Oswald Matika, Takele T. Desta, Judy Bettridge, David A. Hume, Tadelle Dessie, Rob Christley, Paul Wigley, Olivier Hanotte, Pete Kaiser

Genet Sel Evol. 2016; 48: 74. Published online 2016 Sep 29. doi: 10.1186/s12711-016-0252-7

PMCID:: PMC5041578

Abstract Article PDF–2.9M

Select item 485575911.

Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Maria Ulfah, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Ben Dorshorst, Alison Martin, Tomohiro Kono

BMC Genomics. 2016; 17: 320. Published online 2016 May 4. doi: 10.1186/s12864-016-2652-z

PMCID:: PMC4855759

Abstract Article PDF–1.1M

Select item 482769012.

Molecular phylogeny of some avian species using Cytochrome b gene sequence analysis

A Awad, S. R Khalil, Y. M Abd-Elhakim

Iran J Vet Res. 2015 Spring; 16(2): 218–222.

PMCID:: PMC4827690

Abstract Article PDF–466K

Select item 426736313.

Early Holocene chicken domestication in northern China

Hai Xiang, Jianqiang Gao, Baoquan Yu, Hui Zhou, Dawei Cai, Youwen Zhang, Xiaoyong Chen, Xi Wang, Michael Hofreiter, Xingbo Zhao

Proc Natl Acad Sci U S A. 2014 Dec 9; 111(49): 17564–17569. Published online 2014 Nov 24. doi: 10.1073/pnas.1411882111

PMCID:: PMC4267363

Abstract Article PDF–1.1M

Select item 389548114.

Accumulation of Slightly Deleterious Mutations in the Mitochondrial Genome: a Hallmark of Animal Domestication

Austin L. Hughes

Gene. Author manuscript; available in PMC 2014 Feb 15.

Published in final edited form as: Gene. 2013 Feb 15; 515(1): 28–33. Published online 2012 Dec 10. doi: 10.1016/j.gene.2012.11.064

PMCID:: PMC3895481

Abstract Article PDF–1.0M

Select item 409297615.

Genetic Diversity of Myanmar and Indonesia Native Chickens Together with Two Jungle Fowl Species by Using 102 Indels Polymorphisms

Aye Aye Maw, Takeshi Shimogiri, Riztyan, Kotaro Kawabe, Yasuhiro Kawamoto, Shin Okamoto

Asian-Australas J Anim Sci. 2012 Jul; 25(7): 927–934. doi: 10.5713/ajas.2011.11511

PMCID:: PMC4092976

Abstract Article PDF–275K

Select item 303228216.

From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite

Arun Rawat, Kurt A. Gust, Youping Deng, Natàlia Garcia-Reyero, Michael J. Quinn, Jr., Mark S. Johnson, Karl J. Indest, Mohamed O. Elasri, Edward J. Perkins

Physiol Genomics. 2010 Jul; 42(2): 219–235. Published online 2010 Apr 6. doi: 10.1152/physiolgenomics.00022.2010

PMCID:: PMC3032282

Abstract Article

Select item 266438717.

The Mitochondrial Genome Sequence and Molecular Phylogeny of the Turkey, Meleagris gallopavo

Xiaojing Guan, Pradeepa Silva, Kwaku B. Gyenai, Jun Xu, Tuoyu Geng, Zhijian Tu, David C. Samuels, Edward J. Smith

Anim Genet. Author manuscript; available in PMC 2010 Apr 1.

Published in final edited form as: Anim Genet. 2009 Apr; 40(2): 134–141. Published online 2008 Dec 5. doi: 10.1111/j.1365-2052.2008.01810.x

PMCID:: PMC2664387

Abstract Article PDF–453K

Select item 11514818.

Evolution and Characterization of Tetraonine Endogenous Retrovirus: a New Virus Related to Avian Sarcoma and Leukosis Viruses

Derek E. Dimcheff, Mallika Krishnan, David P. Mindell

J Virol. 2001 Feb; 75(4): 2002–2009. doi: 10.1128/JVI.75.4.2002-2009.2001

PMCID:: PMC115148

Abstract Article PDF–659K

Select item 1098368519.

Significant genomic introgression from grey junglefowl (Gallus sonneratii) to domestic chickens (Gallus gallus domesticus)

Xiurong Zhao, Junhui Wen, Xinye Zhang, Jinxin Zhang, Tao Zhu, Huie Wang, Weifang Yang, Guomin Cao, Wenjie Xiong, Yong Liu, Changqing Qu, Zhonghua Ning, Lujiang Qu

J Anim Sci Biotechnol. 2024; 15: 45. Published online 2024 Apr 1. doi: 10.1186/s40104-024-01006-7