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Select item 105479071.

Metabolic versatility of Caldarchaeales from geothermal features of Hawai’i and Chile as revealed by five metagenome-assembled genomes

Manolya Gul Balbay, Maximillian D. Shlafstein, Charles Cockell, Sherry L. Cady, Rebecca D. Prescott, Darlene S. S. Lim, Patrick S. G. Chain, Stuart P. Donachie, Alan W. Decho, Jimmy H. Saw

Front Microbiol. 2023; 14: 1216591. Published online 2023 Sep 20. doi: 10.3389/fmicb.2023.1216591

PMCID:: PMC10547907

Abstract Article PDF–6.6M

Select item 97684502.

Succinyl-CoA:acetate CoA-transferase functioning in the oxidative tricarboxylic acid cycle in Desulfurella acetivorans

Eugenio Pettinato, Pauline Böhnert, Ivan A. Berg

Front Microbiol. 2022; 13: 1080142. Published online 2022 Dec 7. doi: 10.3389/fmicb.2022.1080142

PMCID:: PMC9768450

Abstract Article PDF–2.7M

Select item 88800123.

Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool

Christy-Lynn Peterson, David Alexander, Julie Chih-Yu Chen, Heather Adam, Matthew Walker, Jennifer Ali, Jessica Forbes, Eduardo Taboada, Dillon O. R. Barker, Morag Graham, Natalie Knox, Aleisha R. Reimer

Microorganisms. 2022 Feb; 10(2): 441. Published online 2022 Feb 15. doi: 10.3390/microorganisms10020441

PMCID:: PMC8880012

Abstract Article PDF–2.6M

Select item 85638834.

The existence of a nonclassical TCA cycle in the nucleus that wires the metabolic-epigenetic circuitry

Xujun Liu, Wenzhe Si, Lin He, Jianguo Yang, Yani Peng, Jie Ren, Xiaoping Liu, Tong Jin, Huajing Yu, Zihan Zhang, Xiao Cheng, Wenting Zhang, Lu Xia, Yunchao Huang, Yue Wang, Shumeng Liu, Lin Shan, Yu Zhang, Xiaohan Yang, Haixia Li, Jing Liang, Luyang Sun, Yongfeng Shang

Signal Transduct Target Ther. 2021; 6: 375. Published online 2021 Nov 3. doi: 10.1038/s41392-021-00774-2

PMCID:: PMC8563883

Abstract Article PDF–6.7M

Select item 64031735.

Whole Proteome Clustering of 2,307 Proteobacterial Genomes Reveals Conserved Proteins and Significant Annotation Issues

Svetlana Lockwood, Kelly A. Brayton, Jeff A. Daily, Shira L. Broschat

Front Microbiol. 2019; 10: 383. Published online 2019 Feb 28. doi: 10.3389/fmicb.2019.00383

PMCID:: PMC6403173

Abstract Article PDF–8.2M

Select item 53985046.

Evidence of horizontal gene transfer by transposase gene analyses in Fervidobacterium species

Alba Cuecas, Wirojne Kanoksilapatham, Juan M. Gonzalez

PLoS One. 2017; 12(4): e0173961. Published online 2017 Apr 20. doi: 10.1371/journal.pone.0173961

PMCID:: PMC5398504

Abstract Article PDF–5.8M

Select item 53205917.

The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer

Dawn E. Holmes, Yan Dang, David J. F. Walker, Derek R. Lovley

Microb Genom. 2016 Aug; 2(8): e000072. Published online 2016 Aug 25. doi: 10.1099/mgen.0.000072

PMCID:: PMC5320591

Abstract Article PDF–9.0M

Select item 49189818.

Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer

Raquel Bromberg, Nick V. Grishin, Zbyszek Otwinowski

PLoS Comput Biol. 2016 Jun; 12(6): e1004985. Published online 2016 Jun 23. doi: 10.1371/journal.pcbi.1004985

PMCID:: PMC4918981

Abstract Article PDF–1.6M

Select item 43504109.

Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing

Chia Sing Chan, Kok-Gan Chan, Yea-Ling Tay, Yi-Heng Chua, Kian Mau Goh

Front Microbiol. 2015; 6: 177. Published online 2015 Mar 5. doi: 10.3389/fmicb.2015.00177

PMCID:: PMC4350410

Abstract Article PDF–7.3M

Select item 414879410.

Handling Temperature Bursts Reaching 464°C: Different Microbial Strategies in the Sisters Peak Hydrothermal Chimney

Mirjam Perner, Giorgio Gonnella, Stefan Kurtz, Julie LaRoche

Appl Environ Microbiol. 2014 Aug; 80(15): 4585–4598. doi: 10.1128/AEM.01460-14

PMCID:: PMC4148794

Abstract Article PDF–4.2M

Select item 363607711.

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices

Jenna Morgan Lang, Aaron E. Darling, Jonathan A. Eisen

PLoS One. 2013; 8(4): e62510. Published online 2013 Apr 25. doi: 10.1371/journal.pone.0062510

PMCID:: PMC3636077

Abstract Article PDF–7.3M

Select item 336444612.

Dispensabilities of Carbonic Anhydrase in Proteobacteria

Kenji Ueda, Hiromi Nishida, Teruhiko Beppu

Int J Evol Biol. 2012; 2012: 324549. Published online 2012 May 15. doi: 10.1155/2012/324549

PMCID:: PMC3364446

Abstract Article PDF–536K

Select item 326223413.

Life and Death of Deep-Sea Vents: Bacterial Diversity and Ecosystem Succession on Inactive Hydrothermal Sulfides

Jason B. Sylvan, Brandy M. Toner, Katrina J. Edwards

mBio. 2012 Jan-Feb; 3(1): e00279-11. Published online 2012 Jan 24. doi: 10.1128/mBio.00279-11

PMCID:: PMC3262234

Abstract Article PDF–1.1M

Select item 948746114.

Methylation-Independent Chemotaxis Systems Are the Norm for Gastric-Colonizing Helicobacter Species

Xiaolin Liu, Karen M. Ottemann

J Bacteriol. 2022 Sep; 204(9): e00231-22. Published online 2022 Aug 16. doi: 10.1128/jb.00231-22

PMCID:: PMC9487461

Abstract Article PDF–3.0M

Select item 898315915.

Tracking the Reversed Oxidative Tricarboxylic Acid Cycle in Bacteria

Lydia Steffens, Eugenio Pettinato, Thomas M. Steiner, Wolfgang Eisenreich, Ivan A. Berg

Bio Protoc. 2022 Mar 20; 12(6): e4364. Published online 2022 Mar 20. doi: 10.21769/BioProtoc.4364

PMCID:: PMC8983159

Abstract Article PDF–2.2M

Select item 845469916.

Structure and function of aerotolerant, multiple-turnover THI4 thiazole synthases

Jaya Joshi, Qiang Li, Jorge D. García-García, Bryan J. Leong, You Hu, Steven D. Bruner, Andrew D. Hanson

Biochem J. 2021 Sep 17; 478(17): 3265–3279. Prepublished online 2021 Aug 19. Published online 2021 Sep 7. doi: 10.1042/BCJ20210565

PMCID:: PMC8454699

Abstract Article PDF–13M

Select item 732017317.

Large-scale metabolic interaction network of the mouse and human gut microbiota

Roktaek Lim, Josephine Jill T. Cabatbat, Thomas L. P. Martin, Haneul Kim, Seunghyeon Kim, Jaeyun Sung, Cheol-Min Ghim, Pan-Jun Kim

Sci Data. 2020; 7: 204. Published online 2020 Jun 26. doi: 10.1038/s41597-020-0516-5

Correction in:: Sci Data. 2020; 7: 272.

PMCID:: PMC7320173

Abstract Article PDF–1.6M

Select item 639379318.

Parts-Prospecting for a High-Efficiency Thiamin Thiazole Biosynthesis Pathway

Jiayi Sun, Cindy L. Sigler, Guillaume A.W. Beaudoin, Jaya Joshi, Jenelle A. Patterson, Keun H. Cho, Maria A. Ralat, Jesse F. Gregory, III, David G. Clark, Zhanao Deng, Thomas A. Colquhoun, Andrew D. Hanson

Plant Physiol. 2019 Mar; 179(3): 958–968. Published online 2018 Oct 10. doi: 10.1104/pp.18.01085