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Items: 1 to 20 of 39

1.
Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments
Yue Zheng, Baozhan Wang, Ping Gao, Yiyan Yang, Bu Xu, Xiaoquan Su, Daliang Ning, Qing Tao, Qian Li, Feng Zhao, Dazhi Wang, Yao Zhang, Meng Li, Mari-K H Winkler, Anitra E Ingalls, Jizhong Zhou, Chuanlun Zhang, David A Stahl, Jiandong Jiang, Willm Martens-Habbena, Wei Qin
ISME J. 2024 Jan; 18(1): wrad002. Published online 2024 Jan 10. doi: 10.1093/ismejo/wrad002
PMCID:
PMC10811736
AbstractArticlePDF–3.1M
2.
Genome-resolved analyses of oligotrophic groundwater microbial communities along phenol pollution in a continuous-flow biodegradation model system
Maryam Yavari-Bafghi, Maryam Rezaei Somee, Mohammad Ali Amoozegar, Seyed Mohammad Mehdi Dastgheib, Mahmoud Shavandi
Front Microbiol. 2023; 14: 1147162. Published online 2023 Mar 29. doi: 10.3389/fmicb.2023.1147162
PMCID:
PMC10090433
AbstractArticlePDF–3.3M
3.
Dynamics of immune memory and learning in bacterial communities
Madeleine Bonsma-Fisher, Sidhartha Goyal
eLife. 2023; 12: e81692. Published online 2023 Jan 16. doi: 10.7554/eLife.81692
PMCID:
PMC10118389
AbstractArticlePDF–33M
4.
Mixed heavy metal stress induces global iron starvation response
Jennifer L. Goff, Yan Chen, Michael P. Thorgersen, Linh T. Hoang, Farris L. Poole, II, Elizabeth G. Szink, Gary Siuzdak, Christopher J. Petzold, Michael W. W. Adams
ISME J. 2023 Mar; 17(3): 382–392. Published online 2022 Dec 26. doi: 10.1038/s41396-022-01351-3
PMCID:
PMC9938188
AbstractArticlePDF–2.8M
5.
Insights into methionine S-methylation in diverse organisms
Ming Peng, Chun-Yang Li, Xiu-Lan Chen, Beth T. Williams, Kang Li, Ya-Nan Gao, Peng Wang, Ning Wang, Chao Gao, Shan Zhang, Marie C. Schoelmerich, Jillian F. Banfield, J. Benjamin Miller, Nick E. Le Brun, Jonathan D. Todd, Yu-Zhong Zhang
Nat Commun. 2022; 13: 2947. Published online 2022 May 26. doi: 10.1038/s41467-022-30491-5
PMCID:
PMC9135737
AbstractArticlePDF–3.3M
6.
System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor
Hsiao-Pei Lu, Yung-Hsien Shao, Jer-Horng Wu, Chih-hao Hsieh
mSystems. 2020 Jul-Aug; 5(4): e00398-20. Published online 2020 Jul 21. doi: 10.1128/mSystems.00398-20
PMCID:
PMC7566277
AbstractArticlePDF–1.4M
7.
High-Level Abundances of Methanobacteriales and Syntrophobacterales May Help To Prevent Corrosion of Metal Sheet Piles
Michiel H. in ‘t Zandt, Nardy Kip, Jeroen Frank, Stefan Jansen, Johannes A. van Veen, Mike S. M. Jetten, Cornelia U. Welte
Appl Environ Microbiol. 2019 Oct 15; 85(20): e01369-19. Prepublished online 2019 Aug 16. Published online 2019 Oct 1. doi: 10.1128/AEM.01369-19
PMCID:
PMC6805082
AbstractArticlePDF–1009K
8.
Genomic and metagenomic insights into the microbial community of a thermal spring
Renato Pedron, Alfonso Esposito, Irene Bianconi, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Mario Cristofolini, Nicola Segata, Olivier Jousson
Microbiome. 2019; 7: 8. Published online 2019 Jan 23. doi: 10.1186/s40168-019-0625-6
PMCID:
PMC6343286
AbstractArticlePDF–3.1M
9.
Community dynamics and functional characteristics of naphthalene-degrading populations in contaminated surface sediments and hypoxic/anoxic groundwater
Roland C. Wilhelm, Buck T. Hanson, Subhash Chandra, Eugene Madsen
Environ Microbiol. Author manuscript; available in PMC 2019 Oct 1.
Published in final edited form as: Environ Microbiol. 2018 Jul 26 : 10.1111/1462-2920.14309. Published online 2018 Jul 26. doi: 10.1111/1462-2920.14309
PMCID:
PMC6192831
AbstractArticlePDF–1.3M
10.
Bio-prospecting Bacterial Diversity of Hot Springs in Northern Himalayan Region of India for Laccases
Vijaya Gupta, Naveen Gupta, Neena Capalash, Prince Sharma
Indian J Microbiol. 2017 Sep; 57(3): 285–291. Published online 2017 Jun 20. doi: 10.1007/s12088-017-0656-2
PMCID:
PMC5574774
AbstractArticlePDF–1.0M
11.
Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements
Sumit Handa, Blair G. Paul, Jeffery F. Miller, David L. Valentine, Partho Ghosh
BMC Struct Biol. 2016; 16(1): 13. Published online 2016 Aug 31. doi: 10.1186/s12900-016-0064-6
PMCID:
PMC5006420
AbstractArticlePDF–1.6M
12.
Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community
Christopher L. Hemme, Stefan J. Green, Lavanya Rishishwar, Om Prakash, Angelica Pettenato, Romy Chakraborty, Adam M. Deutschbauer, Joy D. Van Nostrand, Liyou Wu, Zhili He, I. King Jordan, Terry C. Hazen, Adam P. Arkin, Joel E. Kostka, Jizhong Zhou
mBio. 2016 Mar-Apr; 7(2): e02234-15. Published online 2016 Apr 5. doi: 10.1128/mBio.02234-15
PMCID:
PMC4817265
AbstractArticlePDF–4.3M
13.
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes
Christopher L. Hemme, Qichao Tu, Zhou Shi, Yujia Qin, Weimin Gao, Ye Deng, Joy D. Van Nostrand, Liyou Wu, Zhili He, Patrick S. G. Chain, Susannah G. Tringe, Matthew W. Fields, Edward M. Rubin, James M. Tiedje, Terry C. Hazen, Adam P. Arkin, Jizhong Zhou
Front Microbiol. 2015; 6: 1205. Published online 2015 Oct 31. doi: 10.3389/fmicb.2015.01205
PMCID:
PMC4628106
AbstractArticlePDF–1.9M
14.
Diverse Reductive Dehalogenases Are Associated with Clostridiales-Enriched Microcosms Dechlorinating 1,2-Dichloroethane
Giuseppe Merlino, Annalisa Balloi, Massimo Marzorati, Francesca Mapelli, Aurora Rizzi, Davide Lavazza, Francesca de Ferra, Giovanna Carpani, Daniele Daffonchio
Biomed Res Int. 2015; 2015: 242856. Published online 2015 Jul 26. doi: 10.1155/2015/242856
PMCID:
PMC4529907
AbstractArticlePDF–894K
15.
Improved cultivation and metagenomics as new tools for bioprospecting in cold environments
Jan Kjølhede Vester, Mikkel Andreas Glaring, Peter Stougaard
Extremophiles. 2015; 19(1): 17–29. Published online 2014 Nov 16. doi: 10.1007/s00792-014-0704-3
PMCID:
PMC4272415
AbstractArticlePDF–1.7M
16.
Ensemble-based classification approach for micro-RNA mining applied on diverse metagenomic sequences
Sherin M ElGokhy, Mahmoud ElHefnawi, Amin Shoukry
BMC Res Notes. 2014; 7: 286. Published online 2014 May 6. doi: 10.1186/1756-0500-7-286
PMCID:
PMC4051165
AbstractArticlePDF–644K
17.
Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction
Cedric C. Laczny, Nicolás Pinel, Nikos Vlassis, Paul Wilmes
Sci Rep. 2014; 4: 4516. Published online 2014 Mar 31. doi: 10.1038/srep04516
PMCID:
PMC3970189
AbstractArticlePDF–4.0M
18.
Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site
Stefan J. Green, Om Prakash, Puja Jasrotia, Will A. Overholt, Erick Cardenas, Daniela Hubbard, James M. Tiedje, David B. Watson, Christopher W. Schadt, Scott C. Brooks, Joel E. Kostka
Appl Environ Microbiol. 2012 Feb; 78(4): 1039–1047. doi: 10.1128/AEM.06435-11
PMCID:
PMC3273022
AbstractArticlePDF–687K
19.
Strategies for discovery and improvement of enzyme function: state of the art and opportunities
Praveen Kaul, Yasuhisa Asano
Microb Biotechnol. 2012 Jan; 5(1): 18–33. Published online 2011 Dec 14. doi: 10.1111/j.1751-7915.2011.00280.x
PMCID:
PMC3815269
AbstractArticlePDF–386K
20.
Modulating biofilm can potentiate activity of novel plastic-degrading enzymes
Sophie A. Howard, Ronan R. McCarthy
NPJ Biofilms Microbiomes. 2023; 9: 72. Published online 2023 Oct 3. doi: 10.1038/s41522-023-00440-1
PMCID:
PMC10547765
AbstractArticlePDF–4.4M

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