txid435590[Organism:noexp] - PMC

Lily A. Arya, Holly E. Richter, J. Eric Jelovsek, Marie Gantz, Sara Cichowski, Halina Zyczynski, Keisha Dyer, Nazema Siddiqui, Cassandra Carberry, Corey Broeckling, Casey Morrow, Purna Kashyap, Susie Meikle

Neurourol Urodyn. Author manuscript; available in PMC 2019 Feb 1.

Published in final edited form as: Neurourol Urodyn. 2018 Feb; 37(2): 634–641. Published online 2017 Aug 1. doi: 10.1002/nau.23360

PMCID:: PMC5794661

Abstract Article PDF–438K

Select item 55318095.

DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing

Byunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman

PLoS One. 2017; 12(7): e0181463. Published online 2017 Jul 27. doi: 10.1371/journal.pone.0181463

PMCID:: PMC5531809

Abstract Article PDF–5.2M

Select item 51203386.

Alignment-free Transcriptomic and Metatranscriptomic Comparison Using Sequencing Signatures with Variable Length Markov Chains

Weinan Liao, Jie Ren, Kun Wang, Shun Wang, Feng Zeng, Ying Wang, Fengzhu Sun

Sci Rep. 2016; 6: 37243. Published online 2016 Nov 23. doi: 10.1038/srep37243

PMCID:: PMC5120338

Abstract Article PDF–2.3M

Select item 49845377.

Expression of arsenic resistance genes in the obligate anaerobe Bacteroides vulgatus ATCC 8482, a gut microbiome bacterium

Jiaojiao Li, Goutam Mandal, Barry P. Rosen

Anaerobe. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Anaerobe. 2016 Jun; 39: 117–123. Published online 2016 Mar 31. doi: 10.1016/j.anaerobe.2016.03.012

PMCID:: PMC4984537

Abstract Article PDF–1.7M

Select item 44251178.

Novel Systems Modeling Methodology in Comparative Microbial Metabolomics: Identifying Key Enzymes and Metabolites Implicated in Autism Spectrum Disorders

Colin Heberling, Prasad Dhurjati

Int J Mol Sci. 2015 Apr; 16(4): 8949–8967. Published online 2015 Apr 22. doi: 10.3390/ijms16048949

PMCID:: PMC4425117

Abstract Article PDF–716K

Select item 42217929.

Ensemble analysis of adaptive compressed genome sequencing strategies

Zeinab Taghavi

BMC Bioinformatics. 2014; 15(Suppl 9): S13. Published online 2014 Sep 10. doi: 10.1186/1471-2105-15-S9-S13

PMCID:: PMC4221792

Abstract Article PDF–1.1M

Select item 402079110.

Protein Languages Differ Depending on Microorganism Lifestyle

Joseph J. Grzymski, Adam G. Marsh

PLoS One. 2014; 9(5): e96910. Published online 2014 May 14. doi: 10.1371/journal.pone.0096910

PMCID:: PMC4020791

Abstract Article PDF–1.7M

Select item 342952511.

Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants

Maria Cecilia Arias, Étienne G.J. Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball

Mob Genet Elements. 2012 Mar 1; 2(2): 81–87. doi: 10.4161/mge.20375

PMCID:: PMC3429525

Abstract Article PDF–1.7M

Select item 308511012.

TIR domain-containing adaptor SARM is a late addition to the ongoing microbe–host dialog

Qing Zhang, Christian M. Zmasek, Xiaohui Cai, Adam Godzik

Dev Comp Immunol. Author manuscript; available in PMC 2012 Apr 1.

Published in final edited form as: Dev Comp Immunol. 2011 Apr; 35(4): 461–468. Published online 2010 Nov 24. doi: 10.1016/j.dci.2010.11.013

PMCID:: PMC3085110

Abstract Article PDF–138K

Select item 991008213.

Microbial characterization based on multifractal analysis of metagenomes

Xian-hua Xie, Yu-jie Huang, Guo-sheng Han, Zu-guo Yu, Yuan-lin Ma

Front Cell Infect Microbiol. 2023; 13: 1117421. Published online 2023 Jan 26. doi: 10.3389/fcimb.2023.1117421

PMCID:: PMC9910082

Abstract Article PDF–3.0M

Select item 793812214.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Abstract Article PDF–1.5M

Select item 670662715.

Mapping Interactions of Microbial Metabolites with Human G-Protein-Coupled Receptors

Dominic A. Colosimo, Jeffrey A. Kohn, Peter M. Luo, Frank J. Piscotta, Sun M. Han, Amanda J. Pickard, Arka Rao, Justin R. Cross, Louis J. Cohen, Sean F. Brady

Cell Host Microbe. 2019 Aug 14; 26(2): 273–282.e7. doi: 10.1016/j.chom.2019.07.002

PMCID:: PMC6706627

Abstract Article PDF–3.9M

Select item 545024816.

Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes

Subramaniam Sivakumar, Palanivel Anitha, Balsubramanian Ramesh, Gopal Suresh

Bioinformation. 2017; 13(3): 73–77. Published online 2017 Mar 31. doi: 10.6026/97320630013073

PMCID:: PMC5450248

Abstract Article PDF–717K

Select item 471255217.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, Migun Shakya, Mircea Podar, Christopher Quince, Neil Hall

BMC Genomics. 2016; 17: 55. Published online 2016 Jan 14. doi: 10.1186/s12864-015-2194-9