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Select item 110665221.

The genome sequence of the Western Capercaillie Tetrao urogallus Linnaeus, 1758

Alex Ball, Carolyn Robertson, Molly Doubleday, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium

Version 1. Wellcome Open Res. 2024; 9: 198. Published online 2024 Apr 15. doi: 10.12688/wellcomeopenres.21261.1

PMCID:: PMC11066522

Abstract Article PDF–2.5M

Select item 110052942.

Distinct actions of testicular endocrine and lumicrine signaling on the proximal epididymal transcriptome

Daiji Kiyozumi

Reprod Biol Endocrinol. 2024; 22: 40. Published online 2024 Apr 10. doi: 10.1186/s12958-024-01213-x

PMCID:: PMC11005294

Abstract Article PDF–2.6M

Select item 109659483.

The level of protein in the maternal murine diet modulates the facial appearance of the offspring via mTORC1 signaling

Meng Xie, Markéta Kaiser, Yaakov Gershtein, Daniela Schnyder, Ruslan Deviatiiarov, Guzel Gazizova, Elena Shagimardanova, Tomáš Zikmund, Greet Kerckhofs, Evgeny Ivashkin, Dominyka Batkovskyte, Phillip T. Newton, Olov Andersson, Kaj Fried, Oleg Gusev, Hugo Zeberg, Jozef Kaiser, Igor Adameyko, Andrei S. Chagin

Nat Commun. 2024; 15: 2367. Published online 2024 Mar 26. doi: 10.1038/s41467-024-46030-3

PMCID:: PMC10965948

Abstract Article PDF–9.9M

Select item 109048064.

Global conservation status of the jawed vertebrate Tree of Life

Rikki Gumbs, Oenone Scott, Ryan Bates, Monika Böhm, Félix Forest, Claudia L. Gray, Michael Hoffmann, Daniel Kane, Christopher Low, William D. Pearse, Sebastian Pipins, Benjamin Tapley, Samuel T. Turvey, Walter Jetz, Nisha R. Owen, James Rosindell

Nat Commun. 2024; 15: 1101. Published online 2024 Feb 29. doi: 10.1038/s41467-024-45119-z

PMCID:: PMC10904806

Abstract Article PDF–2.6M

Select item 107251325.

Phylogenetic Analysis Provides Insight Into the Molecular Evolution of Nociception and Pain-Related Proteins

Rujun Zhai, Qian Wang

Evol Bioinform Online. 2023; 19: 11769343231216914. Published online 2023 Dec 14. doi: 10.1177/11769343231216914

PMCID:: PMC10725132

Abstract Article PDF–12M

Select item 107600336.

Gene loss and relaxed selection of plaat1 in vertebrates adapted to low-light environments

Danielle H. Drabeck, Jonathan Wiese, Erin Gilbertson, Jairo Arroyave, Dahiana Arcila, S. Elizabeth Alter, Richard Borowsky, Dean Hendrickson, Melanie Stiassny, Suzanne E. McGaugh

Version 1. bioRxiv. Preprint. 2023 Dec 13. doi: 10.1101/2023.12.12.571336

Published in:: Proc Biol Sci. 2024 Jun; 291(2024): 20232847.

PMCID:: PMC10760033

Abstract Article PDF–3.0M

Select item 107452757.

Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees

Matthew J Penn, Neil Scheidwasser, Joseph Penn, Christl A Donnelly, David A Duchêne, Samir Bhatt

Genome Biol Evol. 2023 Dec; 15(12): evad213. Published online 2023 Dec 12. doi: 10.1093/gbe/evad213

PMCID:: PMC10745275

Abstract Article PDF–674K

Select item 107057288.

Analysis of clasp2 Transcription Pattern in Male Germ Cells during Spermatogenesis: A Comparative Study in Zebrafish (Danio rerio) and Guppy (Poecilia reticulata)

Serena Ricci, Maurizio Lazzari, Maria Gabriella Maurizii, Valeria Franceschini, Liliana Milani, Pietro Cacialli

Animals (Basel) 2023 Dec; 13(23): 3617. Published online 2023 Nov 22. doi: 10.3390/ani13233617

PMCID:: PMC10705728

Abstract Article PDF–2.8M

Select item 105403039.

Genomic and comparative analysis of the T cell receptor gamma locus in two Equus species

Serafina Massari, Francesco Giannico, Nunzia Valentina Paolillo, Angela Pala, Anna Caputi Jambrenghi, Rachele Antonacci

Front Immunol. 2023; 14: 1264949. Published online 2023 Sep 15. doi: 10.3389/fimmu.2023.1264949

PMCID:: PMC10540303

Abstract Article PDF–3.4M

Select item 1069927510.

Genealogical Diversity of Endogenous Retrovirus in the Jawless Fish Genome

Song Jing, Wei Jie, Ma Yongping, Sun Yan, Li Zhi

J Microbiol Biotechnol. 2023 Nov 28; 33(11): 1412–1419. Published online 2023 Jul 28. doi: 10.4014/jmb.2306.06028

PMCID:: PMC10699275

Abstract Article PDF–2.5M

Select item 1030067611.

Low hybridization temperatures improve target capture success of invertebrate loci: a case study of leaf-footed bugs (Hemiptera: Coreoidea)

Michael Forthman, Eric R. L. Gordon, Rebecca T. Kimball

R Soc Open Sci. 2023 Jun; 10(6): 230307. Published online June 28, 2023. doi: 10.1098/rsos.230307

PMCID:: PMC10300676

Abstract Article PDF–867K

Select item 1021902612.

Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection

Anton Bogomolov, Sergey Filonov, Irina Chadaeva, Dmitry Rasskazov, Bato Khandaev, Karina Zolotareva, Anna Kazachek, Dmitry Oshchepkov, Vladimir A. Ivanisenko, Pavel Demenkov, Nikolay Podkolodnyy, Ekaterina Kondratyuk, Petr Ponomarenko, Olga Podkolodnaya, Zakhar Mustafin, Ludmila Savinkova, Nikolay Kolchanov, Natalya Tverdokhleb, Mikhail Ponomarenko

Int J Mol Sci. 2023 May; 24(10): 9010. Published online 2023 May 19. doi: 10.3390/ijms24109010

PMCID:: PMC10219026

Abstract Article PDF–1.1M

Select item 1011114413.

Disease association and comparative genomics of compositional bias in human proteins

Christos E. Kouros, Vasiliki Makri, Christos A. Ouzounis, Anastasia Chasapi

Version 2. F1000Res. 2023; 12: 198. Published online 2023 Apr 14. doi: 10.12688/f1000research.129929.2

PMCID:: PMC10111144

Abstract Article PDF–2.9M

Select item 994388314.

A well-preserved ‘placoderm’ (stem-group Gnathostomata) upper jaw from the Early Devonian of Mongolia clarifies jaw evolution

Martin D. Brazeau, Haobo Yuan, Sam Giles, Anna L. Jerve, E. Zorig, Ya. Ariunchimeg, Robert S. Sansom, Robert C. Atwood

R Soc Open Sci. 2023 Feb; 10(2): 221452. Published online Feburary 22, 2023. doi: 10.1098/rsos.221452

PMCID:: PMC9943883

Abstract Article PDF–1.0M

Select item 996650515.

Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

Svetlana Shikhevich, Irina Chadaeva, Bato Khandaev, Rimma Kozhemyakina, Karina Zolotareva, Anna Kazachek, Dmitry Oshchepkov, Anton Bogomolov, Natalya V. Klimova, Vladimir A. Ivanisenko, Pavel Demenkov, Zakhar Mustafin, Arcady Markel, Ludmila Savinkova, Nikolay A. Kolchanov, Vladimir Kozlov, Mikhail Ponomarenko

Int J Mol Sci. 2023 Feb; 24(4): 3996. Published online 2023 Feb 16. doi: 10.3390/ijms24043996

PMCID:: PMC9966505

Abstract Article PDF–14M

Select item 996816516.

In Silico Examination of Single Nucleotide Missense Mutations in NHLH2, a Gene Linked to Infertility and Obesity

Allison T. Madsen, Deborah J. Good

Int J Mol Sci. 2023 Feb; 24(4): 3193. Published online 2023 Feb 6. doi: 10.3390/ijms24043193

PMCID:: PMC9968165

Abstract Article PDF–2.4M

Select item 1010794417.

Evolution and emergence of primate‐specific interferon regulatory factor 9

Sam Drury, Grace Claussen, Allison Zetterman, Hideaki Moriyama, Etsuko N. Moriyama, Luwen Zhang

J Med Virol. 2023 Feb; 95(2): e28521. Published online 2023 Jan 31. doi: 10.1002/jmv.28521

PMCID:: PMC10107944

Abstract Article PDF–3.7M

Select item 993704618.

Origin and Evolution of Marsupial-specific Imprinting Clusters Through Lineage-specific Gene Duplications and Acquisition of Promoter Differential Methylation

Wenqi Cao, Kory C Douglas, Paul B Samollow, John L VandeBerg, Xu Wang, Andrew G Clark

Mol Biol Evol. 2023 Feb; 40(2): msad022. Published online 2023 Jan 31. doi: 10.1093/molbev/msad022

PMCID:: PMC9937046

Abstract Article PDF–2.1M

Select item 990750719.

The Cynosure of CtBP: Evolution of a Bilaterian Transcriptional Corepressor

Ana-Maria Raicu, Dhruva Kadiyala, Madeline Niblock, Aanchal Jain, Yahui Yang, Kalynn M Bird, Kayla Bertholf, Akshay Seenivasan, Mohammad Siddiq, David N Arnosti

Mol Biol Evol. 2023 Feb; 40(2): msad003. Published online 2023 Jan 10. doi: 10.1093/molbev/msad003

PMCID:: PMC9907507

Abstract Article PDF–2.9M

Select item 977236420.

Characterization, comparative, and functional analysis of arylacetamide deacetylase from Gnathostomata organisms

Tania Diaz-Vidal, Christian Berenice Romero-Olivas, Raúl Balam Martínez-Pérez

J Genet Eng Biotechnol. 2022 Dec; 20: 169. Published online 2022 Dec 21. doi: 10.1186/s43141-022-00443-z

PMCID:: PMC9772364

Abstract Article PDF–4.8M

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