txid2682960[Organism:noexp] - PMC

Tom O. Delmont, Juan José Pierella Karlusich, Iva Veseli, Jessika Fuessel, A. Murat Eren, Rachel A. Foster, Chris Bowler, Patrick Wincker, Eric Pelletier

ISME J. 2022 Apr; 16(4): 927–936. Published online 2021 Oct 25. doi: 10.1038/s41396-021-01135-1

Correction in:: ISME J. 2022 Apr; 16(4): 1203.

PMCID:: PMC8941151

Abstract Article PDF–2.4M

Select item 85402674.

The Response of Airborne Mycobiome to Dust Storms in the Eastern Mediterranean

Xuefeng Peng, Daniela Gat, Adina Paytan, Yinon Rudich

J Fungi (Basel) 2021 Oct; 7(10): 802. Published online 2021 Sep 25. doi: 10.3390/jof7100802

PMCID:: PMC8540267

Abstract Article PDF–2.0M

Select item 70455165.

The use of taxon-specific reference databases compromises metagenomic classification

Vanessa R. Marcelino, Edward C. Holmes, Tania C. Sorrell

BMC Genomics. 2020; 21: 184. Published online 2020 Feb 27. doi: 10.1186/s12864-020-6592-2

PMCID:: PMC7045516

Abstract Article PDF–783K

Select item 46818326.

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics

Alejandra Escobar-Zepeda, Arturo Vera-Ponce de León, Alejandro Sanchez-Flores

Front Genet. 2015; 6: 348. Published online 2015 Dec 17. doi: 10.3389/fgene.2015.00348

PMCID:: PMC4681832

Abstract Article PDF–1.5M

Select item 35589677.

VIROME: a standard operating procedure for analysis of viral metagenome sequences

K. Eric Wommack, Jaysheel Bhavsar, Shawn W. Polson, Jing Chen, Michael Dumas, Sharath Srinivasiah, Megan Furman, Sanchita Jamindar, Daniel J. Nasko

Stand Genomic Sci. 2012 Jul 30; 6(3): 427–439. Published online 2012 Jul 27. doi: 10.4056/sigs.2945050

PMCID:: PMC3558967

Abstract Article PDF–2.9M

Select item 27755858.

Windshield splatter analysis with the Galaxy metagenomic pipeline

Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko, The Galaxy Team

Genome Res. 2009 Nov; 19(11): 2144–2153. doi: 10.1101/gr.094508.109

PMCID:: PMC2775585

Abstract Article PDF–984K

Select item 107462209.

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

Harriet Alexander, Sarah K. Hu, Arianna I. Krinos, Maria Pachiadaki, Benjamin J. Tully, Christopher J. Neely, Taylor Reiter

mBio. 2023 Nov-Dec; 14(6): e01676-23. Published online 2023 Nov 10. doi: 10.1128/mbio.01676-23

PMCID:: PMC10746220

Abstract Article PDF–8.8M

Select item 999683510.

Identifying Eukaryotes and Factors Influencing Their Biogeography in Drinking Water Metagenomes

Marco Gabrielli, Zihan Dai, Vincent Delafont, Peer H. A. Timmers, Paul W. J. J. van der Wielen, Manuela Antonelli, Ameet J. Pinto

Environ Sci Technol. 2023 Mar 7; 57(9): 3645–3660. Published online 2023 Feb 24. doi: 10.1021/acs.est.2c09010

PMCID:: PMC9996835

Abstract Article PDF–3.2M

Select item 987893311.

High-resolution metagenomic reconstruction of the freshwater spring bloom

Vinicius S. Kavagutti, Paul-Adrian Bulzu, Cecilia M. Chiriac, Michaela M. Salcher, Indranil Mukherjee, Tanja Shabarova, Vesna Grujčić, Maliheh Mehrshad, Vojtěch Kasalický, Adrian-Stefan Andrei, Jitka Jezberová, Jaromir Seďa, Pavel Rychtecký, Petr Znachor, Karel Šimek, Rohit Ghai

Microbiome. 2023; 11: 15. Published online 2023 Jan 26. doi: 10.1186/s40168-022-01451-4

PMCID:: PMC9878933

Abstract Article PDF–3.0M

Select item 992754512.

Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters

Susheel Bhanu Busi, Laura de Nies, Paraskevi Pramateftaki, Massimo Bourquin, Tyler J. Kohler, Leïla Ezzat, Stilianos Fodelianakis, Grégoire Michoud, Hannes Peter, Michail Styllas, Matteo Tolosano, Vincent De Staercke, Martina Schön, Valentina Galata, Paul Wilmes, Tom Battin

Microbiol Spectr. 2023 Jan-Feb; 11(1): e04069-22. Published online 2023 Jan 23. doi: 10.1128/spectrum.04069-22

PMCID:: PMC9927545

Abstract Article PDF–2.1M

Select item 972910913.

A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA

Kurt H. Kjær, Mikkel Winther Pedersen, Bianca De Sanctis, Binia De Cahsan, Thorfinn S. Korneliussen, Christian S. Michelsen, Karina K. Sand, Stanislav Jelavić, Anthony H. Ruter, Astrid M. A. Schmidt, Kristian K. Kjeldsen, Alexey S. Tesakov, Ian Snowball, John C. Gosse, Inger G. Alsos, Yucheng Wang, Christoph Dockter, Magnus Rasmussen, Morten E. Jørgensen, Birgitte Skadhauge, Ana Prohaska, Jeppe Å. Kristensen, Morten Bjerager, Morten E. Allentoft, Eric Coissac, PhyloNorway Consortium, Alexandra Rouillard, Alexandra Simakova, Antonio Fernandez-Guerra, Chris Bowler, Marc Macias-Fauria, Lasse Vinner, John J. Welch, Alan J. Hidy, Martin Sikora, Matthew J. Collins, Richard Durbin, Nicolaj K. Larsen, Eske Willerslev

Nature. 2022; 612(7939): 283–291. Published online 2022 Dec 7. doi: 10.1038/s41586-022-05453-y

PMCID:: PMC9729109

Abstract Article PDF–11M

Select item 930327114.

How clear is our current view on microbial dark matter? (Re-)assessing public MAG & SAG datasets with MDMcleaner

John Vollmers, Sandra Wiegand, Florian Lenk, Anne-Kristin Kaster

Nucleic Acids Res. 2022 Jul 22; 50(13): e76. Published online 2022 May 10. doi: 10.1093/nar/gkac294

PMCID:: PMC9303271

Abstract Article PDF–2.4M

Select item 912850915.

Host-Associated Phages Disperse across the Extraterrestrial Analogue Antarctica

Janina Rahlff, Till L. V. Bornemann, Anna Lopatina, Konstantin Severinov, Alexander J. Probst

Appl Environ Microbiol. 2022 May; 88(10): e00315-22. Published online 2022 May 2. doi: 10.1128/aem.00315-22

PMCID:: PMC9128509

Abstract Article PDF–2.0M

Select item 990376916.

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom O. Delmont, Morgan Gaia, Damien D. Hinsinger, Paul Frémont, Chiara Vanni, Antonio Fernandez-Guerra, A. Murat Eren, Artem Kourlaiev, Leo d'Agata, Quentin Clayssen, Emilie Villar, Karine Labadie, Corinne Cruaud, Julie Poulain, Corinne Da Silva, Marc Wessner, Benjamin Noel, Jean-Marc Aury, Tara Oceans Coordinators, Colomban de Vargas, Chris Bowler, Eric Karsenti, Eric Pelletier, Patrick Wincker, Olivier Jaillon

Cell Genom. 2022 May 11; 2(5): 100123. Published online 2022 Apr 28. doi: 10.1016/j.xgen.2022.100123

PMCID:: PMC9903769

Abstract Article PDF–5.6M

Select item 893846617.

Microbiomes in the Challenger Deep slope and bottom-axis sediments

Ying-Li Zhou, Paraskevi Mara, Guo-Jie Cui, Virginia P. Edgcomb, Yong Wang

Nat Commun. 2022; 13: 1515. Published online 2022 Mar 21. doi: 10.1038/s41467-022-29144-4

PMCID:: PMC8938466

Abstract Article PDF–2.6M

Select item 800747318.

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes

Xuefeng Peng, St. Elmo Wilken, Thomas S. Lankiewicz, Sean P. Gilmore, Jennifer L. Brown, John K. Henske, Candice L. Swift, Asaf Salamov, Kerrie Barry, Igor V. Grigoriev, Michael K. Theodorou, David L. Valentine, Michelle A. O’Malley

Nat Microbiol. 2021; 6(4): 499–511. Published online 2021 Feb 1. doi: 10.1038/s41564-020-00861-0

PMCID:: PMC8007473

Abstract Article PDF–7.0M

Select item 346754919.

Targeted genome reconstruction strategy for endosymbionts in eukaryotic genomes

Surya Saha, Wayne B Hunter, Magdalen Lindeberg

BMC Proc. 2012; 6(Suppl 6): P33. Published online 2012 Oct 1. doi: 10.1186/1753-6561-6-S6-P33

PMCID:: PMC3467549

Article PDF–174K

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