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Select item 102457601.

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

Iva Veseli, Yiqun T. Chen, Matthew S. Schechter, Chiara Vanni, Emily C. Fogarty, Andrea R. Watson, Bana A. Jabri, Ran Blekhman, Amy D. Willis, Michael K. Yu, Antonio Fernandez-Guerra, Jessika Fussel, A. Murat Eren

Version 3. bioRxiv. Preprint. NaN NaN [revised 2024 Jul 26]. doi: 10.1101/2023.05.10.540289

PMCID:: PMC10245760

Abstract PDF–5.4M

Select item 110423132.

Order of amino acid recruitment into the genetic code resolved by Last Universal Common Ancestor’s protein domains

Sawsan Wehbi, Andrew Wheeler, Benoit Morel, Nandini Manepalli, Bui Quang Minh, Dante S. Lauretta, Joanna Masel

Version 4. bioRxiv. Preprint. 2024 Apr 16 [revised 2024 Oct 24]. doi: 10.1101/2024.04.13.589375

PMCID:: PMC11042313

Abstract Article PDF–485K

Select item 110876743.

Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii

Maaike S. Besteman, Anna Doloman, Diana Z. Sousa

Environ Microbiol Rep. 2024 Jun; 16(3): e13276. Published online 2024 May 10. doi: 10.1111/1758-2229.13276

PMCID:: PMC11087674

Abstract Article PDF–11M

Select item 110874634.

Metagenomic sequencing and reconstruction of 82 microbial genomes from barley seed communities

Kalonji A. Tshisekedi, Pieter De Maayer, Angela Botes

Sci Data. 2024; 11: 484. Published online 2024 May 10. doi: 10.1038/s41597-024-03332-x

PMCID:: PMC11087463

Abstract Article PDF–2.0M

Select item 110838455.

Dysregulated brain-gut axis in the setting of traumatic brain injury: review of mechanisms and anti-inflammatory pharmacotherapies

Mahmoud G. El Baassiri, Zachariah Raouf, Sarah Badin, Alejandro Escobosa, Chhinder P. Sodhi, Isam W. Nasr

J Neuroinflammation. 2024; 21: 124. Published online 2024 May 10. doi: 10.1186/s12974-024-03118-3

PMCID:: PMC11083845

Abstract Article PDF–4.0M

Select item 110838206.

Interactions between host and gut microbiota in gestational diabetes mellitus and their impacts on offspring

Shuxian Wang, Zifeng Cui, Huixia Yang

BMC Microbiol. 2024; 24: 161. Published online 2024 May 10. doi: 10.1186/s12866-024-03255-y

PMCID:: PMC11083820

Abstract Article PDF–2.1M

Select item 110814267.

A methyl esterase from Bifidobacterium longum subsp. longum reshapes the prebiotic properties of apple pectin by triggering differential modulatory capacity in faecal cultures

Inés Calvete‐Torre, Carlos Sabater, Nerea Muñoz‐Almagro, Ana Belén Campelo, F. Javier Moreno, Abelardo Margolles, Lorena Ruiz

Microb Biotechnol. 2024 May; 17(5): e14443. Published online 2024 May 9. doi: 10.1111/1751-7915.14443

PMCID:: PMC11081426

Abstract Article PDF–14M

Select item 110859718.

An emerging strategy: probiotics enhance the effectiveness of tumor immunotherapy via mediating the gut microbiome

Shuaiming Jiang, Wenyao Ma, Chenchen Ma, Zeng Zhang, Wanli Zhang, Jiachao Zhang

Gut Microbes. 2024; 16(1): 2341717. Published online 2024 May 8. doi: 10.1080/19490976.2024.2341717

PMCID:: PMC11085971

Abstract Article PDF–4.1M

Select item 110789479.

Incidence of resistance to ALS and ACCase inhibitors in Echinochloa species and soil microbial composition in Northern Italy

Carlo Maria Cusaro, Enrica Capelli, Anna Maria Picco, Maura Brusoni

Sci Rep. 2024; 14: 10544. Published online 2024 May 8. doi: 10.1038/s41598-024-59856-0

PMCID:: PMC11078947

Abstract Article PDF–2.4M

Select item 1107892310.

Insights into phage-bacteria interaction in cold seep Gigantidas platifrons through metagenomics and transcriptome analyses

Yan Zhang, Hao Chen, Chao Lian, Lei Cao, Yang Guo, Minxiao Wang, Zhaoshan Zhong, Mengna Li, Huan Zhang, Chaolun Li

Sci Rep. 2024; 14: 10540. Published online 2024 May 8. doi: 10.1038/s41598-024-61272-3

PMCID:: PMC11078923

Abstract Article PDF–4.9M

Select item 1107880011.

Loss to gain: pseudogenes in microorganisms, focusing on eubacteria, and their biological significance

Yi Yang, Pengzhi Wang, Samir El Qaidi, Philip R. Hardwidge, Jinlin Huang, Guoqiang Zhu

Appl Microbiol Biotechnol. 2024; 108(1): 328. Published online 2024 May 8. doi: 10.1007/s00253-023-12971-w

PMCID:: PMC11078800

Abstract Article PDF–2.5M

Select item 1108602912.

Meta-analysis identifying gut microbial biomarkers of Qinghai-Tibet Plateau populations and the functionality of microbiota-derived butyrate in high-altitude adaptation

Hongwen Zhao, Longjie Sun, Jiali Liu, Bin Shi, Yaopeng Zhang, Ci-Ren Qu-Zong, Tsechoe Dorji, Tieyu Wang, Hongli Yuan, Jinshui Yang

Gut Microbes. 2024; 16(1): 2350151. Published online 2024 May 7. doi: 10.1080/19490976.2024.2350151

PMCID:: PMC11086029

Abstract Article PDF–13M

Select item 1107401413.

Dental plaque microbiota sequence counts for microbial profiling and resistance genes detection

Laura Veschetti, Salvatore Paiella, Maria Carelli, Francesca Zotti, Erica Secchettin, Giuseppe Malleo, Caterina Signoretto, Giorgia Zulianello, Riccardo Nocini, Anna Crovetto, Roberto Salvia, Claudio Bassi, Giovanni Malerba

Appl Microbiol Biotechnol. 2024; 108(1): 319. Published online 2024 May 6. doi: 10.1007/s00253-024-13152-z

PMCID:: PMC11074014

Abstract Article PDF–1.6M

Select item 1107133914.

Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation

Kok Jun Liew, Saleha Shahar, Mohd Shahir Shamsir, Nawal Binti Shaharuddin, Chee Hung Liang, Kok-Gan Chan, Stephen Brian Pointing, Rajesh Kumar Sani, Kian Mau Goh

Environ Microbiome. 2024; 19: 29. Published online 2024 May 6. doi: 10.1186/s40793-024-00572-7