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Items: 14

1.
Gaussian-Distributed Codon Frequencies of Genomes
Bohdan B. Khomtchouk, Wolfgang Nonner
G3 (Bethesda) 2019 May; 9(5): 1449–1456. Published online 2019 Feb 26. doi: 10.1534/g3.118.200939
PMCID:
PMC6505138
AbstractArticlePDF–1.3M
2.
Protein Languages Differ Depending on Microorganism Lifestyle
Joseph J. Grzymski, Adam G. Marsh
PLoS One. 2014; 9(5): e96910. Published online 2014 May 14. doi: 10.1371/journal.pone.0096910
PMCID:
PMC4020791
AbstractArticlePDF–1.7M
3.
On the molecular mechanism of GC content variation among eubacterial genomes
Hao Wu, Zhang Zhang, Songnian Hu, Jun Yu
Biol Direct. 2012; 7: 2. Published online 2012 Jan 10. doi: 10.1186/1745-6150-7-2
PMCID:
PMC3274465
AbstractArticlePDF–624K
4.
Modeling compositional dynamics based on GC and purine contents of protein-coding sequences
Zhang Zhang, Jun Yu
Biol Direct. 2010; 5: 63. Published online 2010 Nov 8. doi: 10.1186/1745-6150-5-63
PMCID:
PMC2989939
AbstractArticlePDF–1.2M
5.
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva
Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2
PMCID:
PMC1852316
AbstractArticlePDF–707K
6.
Information theoretic perspective on genome clustering
Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy
Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039
PMCID:
PMC7938122
AbstractArticlePDF–1.5M
7.
Contributions of Speed and Accuracy to Translational Selection in Bacteria
Wenqi Ran, Paul G. Higgs
PLoS One. 2012; 7(12): e51652. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0051652
PMCID:
PMC3522724
AbstractArticlePDF–374K
8.
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes
Michael Y Galperin, Sergei L Mekhedov, Pere Puigbo, Sergey Smirnov, Yuri I Wolf, Daniel J Rigden
Environ Microbiol. 2012 Nov; 14(11): 2870–2890. doi: 10.1111/j.1462-2920.2012.02841.x
PMCID:
PMC3533761
AbstractArticlePDF–439K
9.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
AbstractArticlePDF–2.0M
10.
Functional Promiscuity of Homologues of the Bacterial ArsA ATPases
Rostislav Castillo, Milton H. Saier, Jr.
Int J Microbiol. 2010; 2010: 187373. Published online 2010 Oct 20. doi: 10.1155/2010/187373
PMCID:
PMC2963123
AbstractArticlePDF–1.5M
11.
Comparative analysis of the extracellular proteomes of two Clostridium sordellii strains exhibiting contrasting virulence
Maureen T. Kachman, Mary C. Hurley, Teri Thiele, Geetha Srinivas, David M. Aronoff
Anaerobe. Author manuscript; available in PMC 2011 Aug 1.
Published in final edited form as: Anaerobe. 2010 Aug; 16(4): 454–460. Published online 2010 Mar 23. doi: 10.1016/j.anaerobe.2010.03.004
PMCID:
PMC2919616
AbstractArticlePDF–239K
12.
Minimum Contradiction Matrices in Whole Genome Phylogenies
Marc Thuillard
Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909
PMCID:
PMC2614196
AbstractArticlePDF–498K
13.
Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference
K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy
PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193
PMCID:
PMC2075365
AbstractArticlePDF–295K
14.
Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes
A Krupa, N Srinivasan
BMC Genomics. 2005; 6: 129. Published online 2005 Sep 19. doi: 10.1186/1471-2164-6-129
PMCID:
PMC1262709
AbstractArticlePDF–746K

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