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Select item 110770671.

Protein G-quadruplex interactions and their effects on phase transitions and protein aggregation

Bikash R Sahoo, Vojč Kocman, Nathan Clark, Nikhil Myers, Xiexiong Deng, Ee L Wong, Harry J Yang, Anita Kotar, Bryan B Guzman, Daniel Dominguez, Janez Plavec, James C A Bardwell

Nucleic Acids Res. 2024 May 8; 52(8): 4702–4722. Published online 2024 Apr 4. doi: 10.1093/nar/gkae229

PMCID:: PMC11077067

Abstract Article PDF–5.3M

Select item 108232152.

A TeZla micromixer for interrogating the early and broad folding landscape of G-quadruplex via multistage velocity descending

Zheyu Li, Rui Hu, Tao Li, Jiang Zhu, Huijuan You, Yiwei Li, Bi-Feng Liu, Conggang Li, Ying Li, Yunhuang Yang

Proc Natl Acad Sci U S A. 2024 Jan 23; 121(4): e2315401121. Published online 2024 Jan 17. doi: 10.1073/pnas.2315401121

PMCID:: PMC10823215

Abstract Article PDF–3.4M

Select item 95612633.

Switching G-quadruplex to parallel duplex by molecular rotor clustering

Qiuda Xu, Mujing Yang, Yun Chang, Shuzhen Peng, Dandan Wang, Xiaoshun Zhou, Yong Shao

Nucleic Acids Res. 2022 Oct 14; 50(18): 10249–10263. Published online 2022 Sep 21. doi: 10.1093/nar/gkac811

PMCID:: PMC9561263

Abstract Article PDF–4.4M

Select item 94964754.

Single-Stranded DNA Binding Proteins and Their Identification Using Machine Learning-Based Approaches

Jun-Tao Guo, Fareeha Malik

Biomolecules. 2022 Sep; 12(9): 1187. Published online 2022 Aug 26. doi: 10.3390/biom12091187

PMCID:: PMC9496475

Abstract Article PDF–1.4M

Select item 92349605.

Development of Force Field Parameters for the Simulation of Single- and Double-Stranded DNA Molecules and DNA–Protein Complexes

Maxwell R. Tucker, Stefano Piana, Dazhi Tan, Michael V. LeVine, David E. Shaw

J Phys Chem B. 2022 Jun 23; 126(24): 4442–4457. Published online 2022 Jun 12. doi: 10.1021/acs.jpcb.1c10971

PMCID:: PMC9234960

Abstract Article PDF–5.5M

Select item 91737006.

Investigating the role of G-quadruplexes at Saccharomyces cerevisiae telomeres

Sonia Stinus, Fernando R. Rosas Bringas, Lisa Wanders, Michael Chang

Microb Cell. 2022 Jun 6; 9(6): 126–132. Published online 2022 May 19. doi: 10.15698/mic2022.06.778

PMCID:: PMC9173700

Abstract Article PDF–1.1M

Select item 92505687.

G4-quadruplex-binding proteins: review and insights into selectivity

Vanessa Meier-Stephenson

Biophys Rev. 2022 Jun; 14(3): 635–654. Published online 2022 Apr 20. doi: 10.1007/s12551-022-00952-8

PMCID:: PMC9250568

Abstract Article PDF–2.2M

Select item 89530828.

Major Achievements in the Design of Quadruplex-Interactive Small Molecules

Eduarda Mendes, Israa M. Aljnadi, Bárbara Bahls, Bruno L. Victor, Alexandra Paulo

Pharmaceuticals (Basel) 2022 Mar; 15(3): 300. Published online 2022 Feb 28. doi: 10.3390/ph15030300

PMCID:: PMC8953082

Abstract Article PDF–33M

Select item 87812089.

Structured Waters Mediate Small Molecule Binding to G-Quadruplex Nucleic Acids

Stephen Neidle

Pharmaceuticals (Basel) 2022 Jan; 15(1): 7. Published online 2021 Dec 22. doi: 10.3390/ph15010007

PMCID:: PMC8781208

Abstract Article PDF–3.1M

Select item 847411310.

Combining Electrospray Mass Spectrometry (ESI-MS) and Computational Techniques in the Assessment of G-Quadruplex Ligands: A Hybrid Approach to Optimize Hit Discovery

Giovanni Ribaudo, Alberto Ongaro, Erika Oselladore, Maurizio Memo, Alessandra Gianoncelli

J Med Chem. 2021 Sep 23; 64(18): 13174–13190. Published online 2021 Sep 12. doi: 10.1021/acs.jmedchem.1c00962

PMCID:: PMC8474113

Abstract Article PDF–4.6M

Select item 1025001711.

RNA-ligand molecular docking: advances and challenges

Yuanzhe Zhou, Yangwei Jiang, Shi-Jie Chen

Wiley Interdiscip Rev Comput Mol Sci. Author manuscript; available in PMC 2023 Jun 8.

Published in final edited form as: Wiley Interdiscip Rev Comput Mol Sci. 2022 May-Jun; 12(3): e1571. Published online 2021 Aug 16. doi: 10.1002/wcms.1571