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Select item 99008461.

Strain tracking with uncertainty quantification

Younhun Kim, Colin J. Worby, Sawal Acharya, Lucas R. van Dijk, Daniel Alfonsetti, Zackary Gromko, Philippe Azimzadeh, Karen Dodson, Georg Gerber, Scott Hultgren, Ashlee M. Earl, Bonnie Berger, Travis E. Gibson

Version 2. bioRxiv. Preprint. 2023 Jan 26 [revised 2024 Jul 23]. doi: 10.1101/2023.01.25.525531

PMCID:: PMC9900846

Abstract PDF–1.0M

Select item 106592842.

Enteric Populations of Escherichia coli are Likely to be Resistant to Phages Due to O Antigen Expression

Brandon A. Berryhill, Kylie B. Burke, Jake Fontaine, Catherine E. Brink, Mason G. Harvill, David A. Goldberg, Konstantinos T. Konstantinidis, Bruce R. Levin, Michael H. Woodworth

Version 2. bioRxiv. Preprint. 2023 Nov 8 [revised 2024 Jul 2]. doi: 10.1101/2023.11.08.566299

PMCID:: PMC10659284

Abstract Article PDF–774K

Select item 102456943.

The small acid-soluble proteins of Clostridioides difficile regulate sporulation in a SpoIVB2-dependent manner

Hailee N. Nerber, Marko Baloh, Joshua N. Brehm, Joseph A. Sorg

Version 2. bioRxiv. Preprint. 2023 May 18 [revised 2024 Jun 25]. doi: 10.1101/2023.05.17.541253

Published in:: PLoS Pathog. 2024 Aug; 20(8): e1012507.

PMCID:: PMC10245694

Abstract Article PDF–22M

Select item 110890254.

Cefiderocol in Difficult-to-Treat Nf-GNB in ICU Settings

Charles-Hervé Vacheron, Anne Kaas, Jean-Philippe Rasigade, Frederic Aubrun, Laurent Argaud, Baptiste Balanca, Jean-Luc Fellahi, Jean Christophe Richard, Anne-Claire Lukaszewicz, Florent Wallet, Olivier Dauwalder, Arnaud Friggeri

Ann Intensive Care. 2024; 14: 73. Published online 2024 May 12. doi: 10.1186/s13613-024-01308-z

Correction in:: Ann Intensive Care. 2024; 14: 81.

PMCID:: PMC11089025

Abstract Article PDF–1.3M

Select item 110875405.

TFPI from erythroblasts drives heme production in central macrophages promoting erythropoiesis in polycythemia

Jun-Kai Ma, Li-Da Su, Lin-Lin Feng, Jing-Lin Li, Li Pan, Qupei Danzeng, Yanwei Li, Tongyao Shang, Xiao-Lin Zhan, Si-Ying Chen, Shibo Ying, Jian-Rao Hu, Xue Qun Chen, Qi Zhang, Tingbo Liang, Xin-Jiang Lu

Nat Commun. 2024; 15: 3976. Published online 2024 May 10. doi: 10.1038/s41467-024-48328-8

PMCID:: PMC11087540

Abstract Article PDF–2.9M

Select item 110850206.

Clostridioides Difficile: A Concise Review of Best Practices and Updates

Abdelrahman Yakout, Yan Bi, Dana M. Harris

J Prim Care Community Health. 2024 Jan-Dec; 15: 21501319241249645. Published online 2024 May 10. doi: 10.1177/21501319241249645

PMCID:: PMC11085020

Abstract Article PDF–804K

Select item 110808027.

Take vedolizumab home: transition from intravenous to subcutaneous treatment

Kaituo Huang, Lingya Yao, Jing Liu, Qian Cao

Ther Adv Chronic Dis. 2024; 15: 20406223241247648. Published online 2024 May 8. doi: 10.1177/20406223241247648

PMCID:: PMC11080802

Abstract Article PDF–1.3M

Select item 110776018.

Clostridioides difficile infection in trials of short versus long duration of antimicrobials

Dimitri M. Drekonja, Peyton Smith

Antimicrob Steward Healthc Epidemiol. 2024; 4(1): e75. Published online 2024 May 6. doi: 10.1017/ash.2024.45

PMCID:: PMC11077601

Article PDF–88K

Select item 110703829.

Rapid Diagnosis of Pneumocystis jirovecii Pneumonia and Respiratory Tract Colonization by Next-Generation Sequencing

Fanfan Xing, Chaowen Deng, Zhendong Luo, Shan Zou, Min Liu, Haiyan Ye, Linlin Sun, Chi-Ching Tsang, Simon K. F. Lo, Susanna K. P. Lau, Patrick C. Y. Woo

Mycopathologia. 2024; 189(3): 38. Published online 2024 May 5. doi: 10.1007/s11046-024-00849-y

PMCID:: PMC11070382

Abstract Article PDF–913K

Select item 1106320910.

Phylogenomics and genetic analysis of solvent-producing Clostridium species

Rasmus O. Jensen, Frederik Schulz, Simon Roux, Dawn M. Klingeman, Wayne P. Mitchell, Daniel Udwary, Sarah Moraïs, Vinicio Reynoso, James Winkler, Shilpa Nagaraju, Sashini De Tissera, Nicole Shapiro, Natalia Ivanova, T. B. K. Reddy, Itzhak Mizrahi, Sagar M. Utturkar, Edward A. Bayer, Tanja Woyke, Nigel J. Mouncey, Michael C. Jewett, Séan D. Simpson, Michael Köpke, David T. Jones, Steven D. Brown

Sci Data. 2024; 11: 432. Published online 2024 May 1. doi: 10.1038/s41597-024-03210-6

PMCID:: PMC11063209

Abstract Article PDF–7.5M

Select item 1106045611.

Identifying Contact Time Required for Secondary Transmission of Clostridioides difficile Infections by Using Real-Time Locating System

Min Hyung Kim, Jaewoong Kim, Heejin Ra, Sooyeon Jeong, Yoon Soo Park, Dongju Won, Hyukmin Lee, Heejung Kim

Emerg Infect Dis. 2024 May; 30(5): 908–915. doi: 10.3201/eid3005.231588

PMCID:: PMC11060456

Abstract Article PDF–784K

Select item 1107689912.

Quantitative and qualitative evaluation of antimicrobial usage: the first step for antimicrobial stewardship

Song Mi Moon, Bongyoung Kim, Hong Bin Kim

Korean J Intern Med. 2024 May; 39(3): 383–398. Published online 2024 Apr 30. doi: 10.3904/kjim.2023.506

PMCID:: PMC11076899

Abstract Article PDF–598K

Select item 1105868613.

Endoscopic assessment of the J pouch in ulcerative colitis: A narrative review

Shintaro Akiyama, Edward L Barnes, Tsubasa Onoda, Naoki Ishikawa, Mamiko Shiroyama, Yuka Ito, David T Rubin, Kiichiro Tsuchiya

DEN Open. 2025 Apr; 5(1): e373. Published online 2024 Apr 30. doi: 10.1002/deo2.373

PMCID:: PMC11058686

Abstract Article PDF–6.8M

Select item 1107090314.

The emerging role of the gut virome in necrotizing enterocolitis

Cong Yi, Jia Chen, Xiang She

Heliyon. 2024 May 15; 10(9): e30496. Published online 2024 Apr 29. doi: 10.1016/j.heliyon.2024.e30496

PMCID:: PMC11070903

Abstract Article PDF–358K

Select item 1105735015.

Safety of Proton Pump Inhibitors in Pediatric Population: A Systematic Review

Deekshitha Alla, Dhruv Jayeshkumar Shah, Muneesh Seepana, Rishabh Baskara Salian, Sai Santhosha Mrudula Alla, Midhun Krishna Mohanan, Mert Sabıroğlu, Mohan Sai Sunith Vegesna, Aradhya Singh, Srajan Gupta, Shushrutha Shivalingappa Rekha

Glob Pediatr Health. 2024; 11: 2333794X241248967. Published online 2024 Apr 29. doi: 10.1177/2333794X241248967

PMCID:: PMC11057350

Abstract Article PDF–1004K

Select item 1108425916.

Unravelling the Link between the Gut Microbiome and Autoimmune Kidney Diseases: A Potential New Therapeutic Approach

Diana Shu Yee Tan, Yibeltal Akelew, Matthew Snelson, Jenny Nguyen, Kim Maree O’Sullivan

Int J Mol Sci. 2024 May; 25(9): 4817. Published online 2024 Apr 28. doi: 10.3390/ijms25094817

PMCID:: PMC11084259

Abstract Article PDF–1.7M

Select item 1105794217.

Gastrointestinal microbiota-directed nutritional and therapeutic interventions for inflammatory bowel disease: opportunities and challenges

Devendra Paudel, Divek V T Nair, Grace Joseph, Rita Castro, Amit K Tiwari, Vishal Singh

Gastroenterol Rep (Oxf) 2024; 12: goae033. Published online 2024 Apr 27. doi: 10.1093/gastro/goae033

PMCID:: PMC11057942

Abstract Article PDF–1.5M

Select item 1104685218.

Adequate antiviral treatment lowers overall complications of cytomegalovirus colitis among inpatients with inflammatory bowel diseases

Ching-Reigh Hsieh, Ren-Chin Wu, Chia-Jung Kuo, Pai-Jui Yeh, Yuan-Ming Yeh, Chyi-Liang Chen, Cheng-Tang Chiu, Cheng-Hsun Chiu, Yu-Bin Pan, Yung-Kuan Tsou, Puo-Hsien Le

BMC Infect Dis. 2024; 24: 443. Published online 2024 Apr 26. doi: 10.1186/s12879-024-09317-w

PMCID:: PMC11046852

Abstract Article PDF–2.0M

Select item 1104641119.

Evaluation of alternative methods of tunnel composting (submitted by the European Composting Network) II

EFSA Panel on Biological Hazards (BIOHAZ), Konstantinos Koutsoumanis, Ana Allende, Declan Bolton, Sara Bover‐Cid, Marianne Chemaly, Lieve Herman, Friederike Hilbert, Roland Lindqvist, Maarten Nauta, Romolo Nonno, Luisa Peixe, Panagiotis Skandamis, Giuseppe Ru, Marion Simmons, Alessandra De Cesare, Pablo Fernandez Escamez, Elisabetta Suffredini, Angel Ortiz‐Pelaez, Avelino Alvarez Ordonez

EFSA J. 2024 Apr; 22(4): e8745. Published online 2024 Apr 26. doi: 10.2903/j.efsa.2024.8745