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Select item 106301341.

Fast and robust metagenomic sequence comparison through sparse chaining with skani

Jim Shaw, Yun William Yu

Nat Methods. 2023; 20(11): 1661–1665. Published online 2023 Sep 21. doi: 10.1038/s41592-023-02018-3

PMCID:: PMC10630134

Abstract Article PDF–8.4M

Select item 98307582.

Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes

Jonathan P. Jacobs, Venu Lagishetty, Megan C. Hauer, Jennifer S. Labus, Tien S. Dong, Ryan Toma, Momchilo Vuyisich, Bruce D. Naliboff, Jeffrey M. Lackner, Arpana Gupta, Kirsten Tillisch, Emeran A. Mayer

Microbiome. 2023; 11: 5. Published online 2023 Jan 10. doi: 10.1186/s40168-022-01450-5

PMCID:: PMC9830758

Abstract Article PDF–9.0M

Select item 98509583.

Role of gut microbiota in the pathogenesis and therapeutics of minimal hepatic encephalopathy via the gut-liver-brain axis

Ming Luo, Rui-Juan Xin, Fang-Rui Hu, Li Yao, Sheng-Juan Hu, Fei-Hu Bai

World J Gastroenterol. 2023 Jan 7; 29(1): 144–156. Published online 2023 Jan 7. doi: 10.3748/wjg.v29.i1.144

PMCID:: PMC9850958

Abstract Article PDF–1.4M

Select item 94509054.

Cholecystectomy-induced secondary bile acids accumulation ameliorates colitis through inhibiting monocyte/macrophage recruitment

Yun Liu, Jun Xu, Xinhua Ren, Yu Zhang, Ziliang Ke, Jianhua Zhou, Yang Wang, Yifan Zhang, Yulan Liu

Gut Microbes. 2022; 14(1): 2107387. Published online 2022 Sep 1. doi: 10.1080/19490976.2022.2107387

PMCID:: PMC9450905

Abstract Article PDF–15M

Select item 90937065.

Evaluation of the Effects of a Short Supplementation With Tannins on the Gut Microbiota of Healthy Subjects

Silvia Molino, Alberto Lerma-Aguilera, Nuria Jiménez-Hernández, José Ángel Rufián Henares, M. Pilar Francino

Front Microbiol. 2022; 13: 848611. Published online 2022 Apr 27. doi: 10.3389/fmicb.2022.848611

PMCID:: PMC9093706

Abstract Article PDF–2.2M

Select item 78041316.

Microbiota analysis and transient elastography reveal new extra-hepatic components of liver steatosis and fibrosis in obese patients

Nicolas Lanthier, Julie Rodriguez, Maxime Nachit, Sophie Hiel, Pierre Trefois, Audrey M. Neyrinck, Patrice D. Cani, Laure B. Bindels, Jean-Paul Thissen, Nathalie M. Delzenne

Sci Rep. 2021; 11: 659. Published online 2021 Jan 12. doi: 10.1038/s41598-020-79718-9

Correction in:: Sci Rep. 2021; 11: 6123.

PMCID:: PMC7804131

Abstract Article PDF–1.5M

Select item 77648827.

Impact of Mediterranean Diet on Disease Activity and Gut Microbiota Composition of Rheumatoid Arthritis Patients

Andrea Picchianti Diamanti, Concetta Panebianco, Gerardo Salerno, Roberta Di Rosa, Simonetta Salemi, Maria Laura Sorgi, Giorgia Meneguzzi, Maria Benedetta Mariani, Alessandra Rai, Dalila Iacono, Giorgio Sesti, Valerio Pazienza, Bruno Laganà

Microorganisms. 2020 Dec; 8(12): 1989. Published online 2020 Dec 14. doi: 10.3390/microorganisms8121989

PMCID:: PMC7764882

Abstract Article PDF–1.8M

Select item 76906298.

Differences in Gut Microbiome in Hospitalized Immunocompetent vs. Immunocompromised Children, Including Those With Sickle Cell Disease

Sindhu Mohandas, Vijaya L. Soma, Thi Dong Binh Tran, Erica Sodergren, Tresa Ambooken, David L. Goldman, George Weinstock, Betsy C. Herold

Front Pediatr. 2020; 8: 583446. Published online 2020 Nov 12. doi: 10.3389/fped.2020.583446

PMCID:: PMC7690629

Abstract Article PDF–2.5M

Select item 72514329.

Oral Supplements of Combined Bacillus licheniformis Zhengchangsheng® and Xylooligosaccharides Improve High-Fat Diet-Induced Obesity and Modulate the Gut Microbiota in Rats

Yuyuan Li, Man Liu, He Liu, Xiaoqing Wei, Xianying Su, Ming Li, Jieli Yuan

Biomed Res Int. 2020; 2020: 9067821. Published online 2020 May 18. doi: 10.1155/2020/9067821

PMCID:: PMC7251432

Abstract Article PDF–1.7M

Select item 679662410.

Corynebacterium pacaense sp. nov., Alistipes megaguti sp. nov., Alistipes provencensis sp. nov., 3 new bacteria isolated from fresh human stool specimens

S. Bellali, S. Naud, S. Ndongo, C.I. Lo, H. Anani, D. Raoult, J.-C. Lagier

New Microbes New Infect. 2019 Nov; 32: 100593. Published online 2019 Aug 27. doi: 10.1016/j.nmni.2019.100593

Expression of Concern in:: New Microbes New Infect. 2024 Jun; 59: 101290.

PMCID:: PMC6796624

Abstract Article PDF–1.2M

Select item 613705711.

Antibiotic treatment of rat dams affects bacterial colonization and causes decreased weight gain in pups

Monica Vera-Lise Tulstrup, Henrik Munch Roager, Ida Clement Thaarup, Henrik Lauritz Frandsen, Hanne Frøkiær, Tine Rask Licht, Martin Iain Bahl

Commun Biol. 2018; 1: 145. Published online 2018 Sep 13. doi: 10.1038/s42003-018-0140-5

PMCID:: PMC6137057

Abstract Article PDF–1.0M

Select item 579506612.

Gut Microbiota in Human Systemic Lupus Erythematosus and a Mouse Model of Lupus

Xin M. Luo, Michael R. Edwards, Qinghui Mu, Yang Yu, Miranda D. Vieson, Christopher M. Reilly, S. Ansar Ahmed, Adegbenga A. Bankole

Appl Environ Microbiol. 2018 Feb 15; 84(4): e02288-17. Prepublished online 2017 Dec 1. Published online 2018 Jan 31. doi: 10.1128/AEM.02288-17

PMCID:: PMC5795066

Abstract Article PDF–1.1M

Select item 559129613.

Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets

Alesia Walker, Barbara Pfitzner, Mourad Harir, Monika Schaubeck, Jelena Calasan, Silke S. Heinzmann, Dmitrij Turaev, Thomas Rattei, David Endesfelder, Wolfgang zu Castell, Dirk Haller, Michael Schmid, Anton Hartmann, Philippe Schmitt-Kopplin

Sci Rep. 2017; 7: 11047. Published online 2017 Sep 8. doi: 10.1038/s41598-017-10369-z

PMCID:: PMC5591296

Abstract Article PDF–2.6M

Select item 428430014.

The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota

Jean-Christophe Lagier, Perrine Hugon, Saber Khelaifia, Pierre-Edouard Fournier, Bernard La Scola, Didier Raoult

Clin Microbiol Rev. 2015 Jan; 28(1): 237–264. doi: 10.1128/CMR.00014-14

PMCID:: PMC4284300

Abstract Article PDF–3.2M

Select item 1102090015.

Tomato seed extract promotes health of the gut microbiota and demonstrates a potential new way to valorize tomato waste

Jenni Firrman, Adrienne Narrowe, LinShu Liu, Karley Mahalak, Johanna Lemons, Pieter Van den Abbeele, Aurélien Baudot, Stef Deyaert, Yanfang Li, Yuanhang Yao, Liangli Yu

PLoS One. 2024; 19(4): e0301381. Published online 2024 Apr 16. doi: 10.1371/journal.pone.0301381

PMCID:: PMC11020900

Abstract Article PDF–2.0M

Select item 1098412316.

Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity

Bin Jiao, Ziyu Ouyang, Qianqian Liu, Tianyan Xu, Meidan Wan, Guangrong Ma, Lu Zhou, Jifeng Guo, Junling Wang, Beisha Tang, Zhixiang Zhao, Lu Shen

Gut Microbes. 2024; 16(1): 2331434. Published online 2024 Mar 28. doi: 10.1080/19490976.2024.2331434

PMCID:: PMC10984123

Abstract Article PDF–19M

Select item 1098647317.

Screening potential biomarkers associated with insulin resistance in high-fat diet-fed mice by integrating metagenomics and untargeted metabolomics

Yunyan Zhou, Jiahui Tang, Wei Du, Yong Zhang, Bang-Ce Ye

Microbiol Spectr. 2024 Apr; 12(4): e04094-23. Published online 2024 Feb 27. doi: 10.1128/spectrum.04094-23

PMCID:: PMC10986473

Abstract Article PDF–6.0M

Select item 1083296518.

Longitudinal analysis of the gut microbiome in adolescent patients with anorexia nervosa: microbiome-related factors associated with clinical outcome

Nadia Andrea Andreani, Arunabh Sharma, Brigitte Dahmen, Hannah E. Specht, Nina Mannig, Vanessa Ruan, Lara Keller, John F. Baines, Beate Herpertz-Dahlmann, Astrid Dempfle, Jochen Seitz

Gut Microbes. 2024; 16(1): 2304158. Published online 2024 Jan 31. doi: 10.1080/19490976.2024.2304158