GTR Test Accession:
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GTR000591285.2
CAP
Last updated in GTR:
2020-08-10
View version history
GTR000591285.2,
last updated:
2020-08-10
GTR000591285.1,
registered in GTR:
2020-08-07
Last annual review date for the lab: 2024-07-31
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At a Glance
Test purpose:
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Diagnosis;
Mutation Confirmation
Conditions (1):
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Sensorineural hearing loss disorder
Genes (2):
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GJB2 (13q12.11);
GJB6 (13q12.11)
Methods (2):
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Molecular Genetics - Mutation scanning of select exons: Bi-directional Sanger Sequence Analysis; ...
Target population: Help
Not provided
Clinical validity:
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Sensorineural hearing loss affects 1-2/1000 live newborns; 50% is from …
Clinical utility:
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Establish or confirm diagnosis
Ordering Information
Offered by:
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Test short name:
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Cx26 andCx30
Specimen Source:
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- Buccal swab
- Isolated DNA
- Peripheral (whole) blood
- Saliva
Who can order: Help
- Licensed Physician
Test Order Code:
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2074
Contact Policy:
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Laboratory can only accept contact from health care providers. Patients/families are encouraged to discuss genetic testing options with their health care provider.
Test service:
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Clinical Testing/Confirmation of Mutations Identified Previously
Informed consent required:
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Decline to answer
Pre-test genetic counseling required:
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Decline to answer
Post-test genetic counseling required:
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Decline to answer
Recommended fields not provided:
How to Order,
Lab contact for this test,
Test strategy,
Test development
Conditions
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Total conditions: 1
Condition/Phenotype | Identifier |
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Test Targets
Genes
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Total genes: 2
Gene | Associated Condition | Germline or Somatic | Allele (Lab-provided) | Variant in NCBI |
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Methodology
Total methods: 2
Method Category
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Test method
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Instrument *
Mutation scanning of select exons
Bi-directional Sanger Sequence Analysis
Targeted variant analysis
PCR
* Instrument: Not provided
Clinical Information
Test purpose:
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Diagnosis;
Mutation Confirmation
Clinical validity:
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Sensorineural hearing loss affects 1-2/1000 live newborns; 50% is from genetic origin, 70% corresponding to autosomal recessive non-syndromic symptoms . Half of them have pathogenic variants in GJB2 gene (Connexin 26). In some patients where one or none has been found variants in GJB2 gene, a 342-kb deletion in the …
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View citations (1)
- Connexin 26 and connexin 30 mutations in children with nonsyndromic hearing loss. Erbe CB, et al. Laryngoscope. 2004;114(4):607-11. doi:10.1097/00005537-200404000-00003. PMID: 15064611.
Clinical utility:
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Establish or confirm diagnosis
View citations (1)
- Connexin 26 and connexin 30 mutations in children with nonsyndromic hearing loss. Erbe CB, et al. Laryngoscope. 2004;114(4):607-11. doi:10.1097/00005537-200404000-00003. PMID: 15064611.
Variant Interpretation:
What is the protocol for interpreting a variation as a VUS?
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ACMG-AMP guidelines for the interpretation of sequence variants, 2015 (PMID: 25741868).
ACMG-AMP guidelines for the interpretation of sequence variants, 2015 (PMID: 25741868).
Are family members with defined clinical status recruited to assess significance of VUS without charge?
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Decline to answer.
Decline to answer.
Will the lab re-contact the ordering physician if variant interpretation changes?
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Decline to answer.
Decline to answer.
Recommended fields not provided:
Target population,
Is research allowed on the sample after clinical testing is complete?,
Sample negative report,
Sample positive report
Technical Information
Availability:
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Tests performed
Entire test performed in-house
Entire test performed in-house
Analytical Validity:
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29 patients with severe non-syndromic sensorineural hearing loss with autosomal recessive hereditary pattern were studied. The coding region of the GJB2 gene was studied by sequencing and deletion of the GJB6 gene by PCR. 38% of patients presented variants in both alleles, 3% in a single allele and 59% no …
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Proficiency testing (PT):
Is proficiency testing performed for this test?
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Yes
Method used for proficiency testing: Help
Formal PT program
PT Provider: Help
American College of Medical Genetics / College of American Pathologists, ACMG/CAP
Yes
Method used for proficiency testing: Help
Formal PT program
PT Provider: Help
American College of Medical Genetics / College of American Pathologists, ACMG/CAP
Recommended fields not provided:
Test Confirmation,
Assay limitations,
Description of internal test validation method,
Citations for Analytical validity,
Description of PT method,
Major CAP category, CAP category, CAP test list
Regulatory Approval
FDA Review:
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Not provided
Additional Information
Reviews:
Clinical resources:
Consumer resources:
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