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    si:ch211-217k17.9 si:ch211-217k17.9 [ Danio rerio (zebrafish) ]

    Gene ID: 798921, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-217k17.9provided by ZNC
    Official Full Name
    si:ch211-217k17.9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061207-21
    See related
    AllianceGenome:ZFIN:ZDB-GENE-061207-21
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:ch211-217k17.9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (52376346..52400667)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene si:dkey-121b10.7 Neighboring gene mucin-2-like Neighboring gene si:ch211-217k17.12 Neighboring gene zgc:194101

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007112.7 Chromosome 1 Reference GRCz11 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Protein Arginine Methyltransferase 6 (Prmt6) Is Essential for Early Zebrafish Development through the Direct Suppression of gadd45αa Stress Sensor Gene. Zhao XX, et al. J Biol Chem, 2016 Jan 1. PMID 26487724, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    putative uncharacterized protein DDB_G0282133

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      52376346..52400667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478016.1 → XP_021333691.1  putative uncharacterized protein DDB_G0282133

      UniProtKB/TrEMBL
      A0A8M9QD56
      Conserved Domains (2) summary
      sd00036
      Location:765 → 784
      LRR_3; leucine-rich repeat [structural motif]
      cl02507
      Location:589 → 663
      SEA; SEA domain
    Nucleotide Protein Strain
    Heading Accession and Version

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