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Conserved domains on  [gi|1207107847|ref|XP_021333691|]
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putative uncharacterized protein DDB_G0282133 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SEA super family cl02507
SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed ...
 589-663 2.26e-04

SEA domain; Domain found in Sea urchin sperm protein, Enterokinase, Agrin (SEA). Proposed function of regulating or binding carbohydrate side chains. Recently a proteolytic activity has been shown for a SEA domain.


The actual alignment was detected with superfamily member smart00200:

Pssm-ID: 470595  Cd Length: 121  Bit Score: 42.40  E-value: 2.26e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207107847   589 ELDDQTSQVYKKRVQLVTAELDPIYRAK--YPGFIEVIVLGFSRGSVVTKTQLLFNTTVveqsPTVQEISETLLAAV 663
Cdd:smart00200   24 SLEDPSSEEYQELVRDVEKLLEQIYGKTdlKPDFVGTEVIEFRNGSVVVDLGLLFNEGV----TNGQDVEEDLLQVI 96
 
Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 589-663 2.26e-04

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


Pssm-ID: 214554  Cd Length: 121  Bit Score: 42.40  E-value: 2.26e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207107847   589 ELDDQTSQVYKKRVQLVTAELDPIYRAK--YPGFIEVIVLGFSRGSVVTKTQLLFNTTVveqsPTVQEISETLLAAV 663
Cdd:smart00200   24 SLEDPSSEEYQELVRDVEKLLEQIYGKTdlKPDFVGTEVIEFRNGSVVVDLGLLFNEGV----TNGQDVEEDLLQVI 96
 
Name Accession Description Interval E-value
SEA smart00200
Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating ...
 589-663 2.26e-04

Domain found in sea urchin sperm protein, enterokinase, agrin; Proposed function of regulating or binding carbohydrate sidechains.


Pssm-ID: 214554  Cd Length: 121  Bit Score: 42.40  E-value: 2.26e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207107847   589 ELDDQTSQVYKKRVQLVTAELDPIYRAK--YPGFIEVIVLGFSRGSVVTKTQLLFNTTVveqsPTVQEISETLLAAV 663
Cdd:smart00200   24 SLEDPSSEEYQELVRDVEKLLEQIYGKTdlKPDFVGTEVIEFRNGSVVVDLGLLFNEGV----TNGQDVEEDLLQVI 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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